Clone BO26905 Report

Search the DGRC for BO26905

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:269
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptAtg12-RB
Protein status:BO26905.pep: Imported from assembly
Sequenced Size:367

Clone Sequence Records

BO26905.complete Sequence

367 bp assembled on 2010-07-02

GenBank Submission: KX793932

> BO26905.complete
GAAGTTATCAGTCGACATGGCAGAGACACCAGAATCCCAGGCAGCGCTGA
GCACTTCCTCCTCCACACCTGCAGATAAGGATGGTTCCAAAATTTGTATC
CTTCTGAACGCCACTGGCAATGTGCCCATCATCAAAAAGCGAACCTGGAC
CGTAGATCCCAACAAGACAGTCGGCTGGATACAGACGTTCATCCACAAGT
TTCTGAAACTCGATGCCAGCGAGCAAATTTTCCTGTACGTTAATCAGACA
TTTGCACCTGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGG
AACCAATGGGAAACTGGTGCTCTACTACTGCAAGAATCAGGCGTGGGGCG
CAAGCTTTCTAGACCAT

BO26905.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-RB 336 CG10861-PB 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-RB 469 CG10861-RB 50..382 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12137159..12137295 93..229 685 100 Plus
3L 28110227 3L 12137353..12137472 230..349 600 100 Plus
3L 28110227 3L 12137016..12137091 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:12:34 has no hits.

BO26905.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:48 Download gff for BO26905.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 243..575 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:41 Download gff for BO26905.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..382 17..351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:12 Download gff for BO26905.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..382 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:12 Download gff for BO26905.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12137016..12137091 17..92 100 -> Plus
3L 12137159..12137295 93..229 100 -> Plus
3L 12137353..12137472 230..351 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:41 Download gff for BO26905.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130116..12130191 17..92 100 -> Plus
arm_3L 12130259..12130395 93..229 100 -> Plus
arm_3L 12130453..12130572 230..351 98   Plus

BO26905.pep Sequence

Translation from 16 to 367

> BO26905.pep
MAETPESQAALSTSSSTPADKDGSKICILLNATGNVPIIKKRTWTVDPNK
TVGWIQTFIHKFLKLDASEQIFLYVNQTFAPAPDQIIKNLYECHGTNGKL
VLYYCKNQAWGASFLDH

BO26905.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-PB 111 CG10861-PB 1..111 1..111 594 100 Plus