BO26920.complete Sequence
1081 bp assembled on 2010-07-02
GenBank Submission: KX794156
> BO26920.complete
GAAGTTATCAGTCGACATGACAATCGAATGGGCTCCTCTCCGGGTTCCGC
TGGAACGGCGGCTTCAGACCCTGGTTACGTCATTCTTCACCTATACCTTC
TTTACGCTGCCCATCTCGTCCTGCCTCGCAGTAGCTATCCTGCTGTACTA
CGGCGAAATGTTTGTGCGTAGTCTGCTTCTTATCTATTTTGTGAAAATTT
ATTTGGATTATAAAAGAAATTACGGCATTATGGAAGGTAATGGTTGGTTA
TTCTACCGCAGCAATTGGAGATATCGAAACTACTTCCCCGTCGAACTTGT
AAAAACCGCCGAGCTGCCTCCCAACAGGAACTATATCGTAGCAAGCTTTC
CACACGGAATACTTGGTACTGGAACTTGCATTAACATGAGCCTGGACATC
GACAATTGGCTATCCCTTTACCCGCACGTTCGACCCAAGATCGCCACCCT
GGATCATCACTTCAAGACGCCTTTCCTGCGTGACATATTGCGCTGGTGGG
GCATGGTATCGGTTTCCAAGGAATCCCTGTCCTATTTACTCAGCAAGTCA
AATGATCCAATGCACAAGGATAATCGGGATGGTTTCACATCCAATGCGGT
GGCCGTACTTGTTGGTGGCGCCAAGGAAGCCATGGATTCGCATCCGGGAC
AGTACATTTTGACCCTCAAGGATAGAAAGGGTTTCGTCAAAATGGCTGTT
CGAACCGGATCGTCGATTGTGCCCTCGTTGTCCTTTGGCGAGGTGGACAT
ATTTGATCAGGTGGCTAATCCTCCGGACTCCTCGCTCCGTCGCTTCCAGA
ATGTGGTCAAGAAATTCACAGGCATTTCACCGCTCCTTCCCAAGGGTCGC
GGTATCTTCAACTACAACTATGGCATTCTCCCACATCGACGACGTATTGT
CCAAGTTGTTGGTTCCCCCATCGATGTGGAAAGATGCGAGACTCCCGATC
CCGAATATGTGGACAAGATCCATGGGCAGGTGATCGACGCGCTGGCGAGG
ATGTTCGATGAATACAAAGAGAAGTACACTCCAAACTCAAAGCATATCAA
ACTTATAATACAGGCAAGCTTTCTAGACCAT
BO26920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1946-RA | 1050 | CG1946-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
| CG1942-RA | 1059 | CG1942-PA | 274..1020 | 281..1027 | 1005 | 75.6 | Plus |
| CG1941-RD | 1059 | CG1941-PD | 265..922 | 272..929 | 680 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1946-RA | 1189 | CG1946-RA | 60..1107 | 16..1063 | 5240 | 100 | Plus |
| CG1942-RA | 1305 | CG1942-RA | 458..1204 | 281..1027 | 1005 | 75.6 | Plus |
| CG1941-RD | 1203 | CG1941-RD | 328..985 | 272..929 | 680 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7715878..7716220 | 366..708 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 7716278..7716478 | 708..908 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 7716544..7716699 | 908..1063 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 7714982..7715111 | 16..145 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 7715700..7715823 | 243..366 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 7715531..7715629 | 145..243 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7713316..7713625 | 378..687 | 485 | 77.1 | Plus |
| 2R | 25286936 | 2R | 7713708..7713903 | 713..908 | 320 | 77.6 | Plus |
| 2R | 25286936 | 2R | 7711076..7711404 | 368..696 | 295 | 72.6 | Plus |
| 2R | 25286936 | 2R | 7711481..7711676 | 713..908 | 260 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:11:31 has no hits.
BO26920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:40 Download gff for
BO26920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 1..1047 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:13 Download gff for
BO26920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 61..1107 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:50 Download gff for
BO26920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 61..1107 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:50 Download gff for
BO26920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7716545..7716699 | 909..1065 | 98 | | Plus |
| 2R | 7714983..7715111 | 17..145 | 100 | -> | Plus |
| 2R | 7715532..7715629 | 146..243 | 100 | -> | Plus |
| 2R | 7715701..7715823 | 244..366 | 100 | -> | Plus |
| 2R | 7715879..7716220 | 367..708 | 100 | -> | Plus |
| 2R | 7716279..7716478 | 709..908 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:13 Download gff for
BO26920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3602488..3602616 | 17..145 | 100 | -> | Plus |
| arm_2R | 3603037..3603134 | 146..243 | 100 | -> | Plus |
| arm_2R | 3603206..3603328 | 244..366 | 100 | -> | Plus |
| arm_2R | 3603384..3603725 | 367..708 | 100 | -> | Plus |
| arm_2R | 3603784..3603983 | 709..908 | 100 | -> | Plus |
| arm_2R | 3604050..3604204 | 909..1065 | 98 | | Plus |
BO26920.pep Sequence
Translation from 16 to 1081
> BO26920.pep
MTIEWAPLRVPLERRLQTLVTSFFTYTFFTLPISSCLAVAILLYYGEMFV
RSLLLIYFVKIYLDYKRNYGIMEGNGWLFYRSNWRYRNYFPVELVKTAEL
PPNRNYIVASFPHGILGTGTCINMSLDIDNWLSLYPHVRPKIATLDHHFK
TPFLRDILRWWGMVSVSKESLSYLLSKSNDPMHKDNRDGFTSNAVAVLVG
GAKEAMDSHPGQYILTLKDRKGFVKMAVRTGSSIVPSLSFGEVDIFDQVA
NPPDSSLRRFQNVVKKFTGISPLLPKGRGIFNYNYGILPHRRRIVQVVGS
PIDVERCETPDPEYVDKIHGQVIDALARMFDEYKEKYTPNSKHIKLIIQA
SFLDH
BO26920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1946-PA | 349 | CG1946-PA | 1..349 | 1..349 | 1850 | 100 | Plus |
| CG1942-PA | 352 | CG1942-PA | 1..351 | 1..348 | 1255 | 67.2 | Plus |
| CG1941-PD | 352 | CG1941-PD | 1..351 | 1..348 | 1254 | 66.7 | Plus |
| CG1941-PC | 352 | CG1941-PC | 1..351 | 1..348 | 1254 | 66.7 | Plus |
| CG1941-PB | 352 | CG1941-PB | 1..351 | 1..348 | 1254 | 66.7 | Plus |
