BO26933.complete Sequence
1462 bp assembled on 2010-07-02
> BO26933.complete
GAAGTTATCAGTCGACATGTTTTGGAGTCCAATTATGGGCGATAACTCCG
GCGAATCCGAATACGTCGAAAATAATAGTGTGTATAGTTCAATCACGAGG
CTTTTAAAACTTTTAGAAATGGAGGAAATCTTCATAACGAACATTAAGGC
ATACACCAATAAGTTGGCCGAAAAAGTCAAAAATCTACAAGCTTATATCG
ACTCGGTTGACTACGAATTCCAACAAAGTTTTGAAGATCGAGAGAAATAT
GTCGGTAATCCCATTAATGCATTTAGTCTAGTGAGACGGACACATCAAGA
TCTACCGAAATGGCACAACTATTCACAGCAGATCGTGGGAATGGAGGAAC
TGTTTGCCTTGGAGGAAATTATAGCCAAGGTACCGGATAAAAAGGATATG
GCATATTCACTGGGAGAAATGCATCGGATTGAACAGATTTACGATTTGGA
AGCCATTGAGTTGGCAAGAGGTCGTATTCAGGGCAAGCAATATGACTTTC
GGCCTTCTATTCGGGATTGTGTTGCTTTGGGAGAGCACAAATTTAAAAGG
GAGGACTACCAACGGGCTTCTATGTGGTTTCGCGTGGCCATCAAACATGA
GCCCGAAGGAAATGCCGAGATTATCAACAGCATTCTTGGAGATCCCAAGG
TTAATTTGTATACTTTGTACGCCAAATCAATGCTCATATTCGGCATGATC
AAGTCAAATCCTTCGATGACAATCGCAGAAGCTAAGAAAATATCCTACGA
AGCTCTGAATAAGGCCAGCCTAGCAGATATAAAATCTCTCTTAAATGAGT
TGCTAAGTCAAACTGACGATGAAATTGTTTACGAAATGAATGTTAACAAG
ACAAAACCCTCAGACTACGAAATTGGATGTCGTGGCCAGTTTCTTAGGCG
AAGGAATCATGTTTGCACCTATAATTTCACCATAACCGAATTCTTGAAAC
TAGCTCCCTTGAAACAGGAAGTTTTAAATTGGGATCCTTACATTGTCATA
TATCACGATGTTCTTAATGACGACGAGATCGATAAGTTGAAAAACCACTT
GAATGATACTGACGCGGTGGAAGTCAATCCTATTGAAAAACGCATCTTTC
AACGCATAAACGAATTGACACGACTTAGTTTTGAACATTCAGATCAACAA
ATAGTATCCAAAAACGGTCCTCGAACGCACAAACATAAGAAGGAATATTT
AAAAGGAACATTACTATTTTTTCTTAACAATGTGGAACTCGGTGGTGCTA
TGGTTTTTCCAAAGTTGAAAATATCCGTCTTTCCTCAAAAGGGCAGCTGT
CTCTTTTGGCATAACACACTTGATCCTCGCAGTGAGCCTTTGGAATGCCC
AGTTCTTCAAGGAAATAAAAGGGTTATCACACAAAAAGGTGCATACAATG
GACGACCTATGCAGTACAAGAAAGCAAAGAGTAACCAAAAGTTTGCAAGC
TTTCTAGACCAT
BO26933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18231-RB | 1413 | CG18231-PB | 1..1410 | 35..1444 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18231-RB | 1548 | CG18231-RB | 26..1453 | 17..1444 | 7140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18608460..18608990 | 692..1222 | 2655 | 100 | Plus |
| 3L | 28110227 | 3L | 18608210..18608407 | 496..693 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 18607487..18607662 | 17..192 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 18607718..18607869 | 193..344 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 18608003..18608154 | 344..495 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 18609137..18609287 | 1223..1373 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 18609346..18609417 | 1373..1444 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:27 has no hits.
BO26933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:33 Download gff for
BO26933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 33..1453 | 24..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:44 Download gff for
BO26933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 33..1453 | 24..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:27 Download gff for
BO26933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 33..1453 | 24..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:27 Download gff for
BO26933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18607494..18607662 | 24..192 | 100 | -> | Plus |
| 3L | 18607718..18607869 | 193..344 | 100 | -> | Plus |
| 3L | 18608004..18608154 | 345..495 | 100 | -> | Plus |
| 3L | 18608210..18608406 | 496..692 | 100 | -> | Plus |
| 3L | 18608461..18608990 | 693..1222 | 100 | -> | Plus |
| 3L | 18609137..18609287 | 1223..1373 | 100 | -> | Plus |
| 3L | 18609347..18609417 | 1374..1446 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:44 Download gff for
BO26933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18600594..18600762 | 24..192 | 100 | -> | Plus |
| arm_3L | 18600818..18600969 | 193..344 | 100 | -> | Plus |
| arm_3L | 18601104..18601254 | 345..495 | 100 | -> | Plus |
| arm_3L | 18601310..18601506 | 496..692 | 100 | -> | Plus |
| arm_3L | 18601561..18602090 | 693..1222 | 100 | -> | Plus |
| arm_3L | 18602237..18602387 | 1223..1373 | 100 | -> | Plus |
| arm_3L | 18602447..18602517 | 1374..1446 | 97 | | Plus |
BO26933.pep Sequence
Translation from 16 to 1462
> BO26933.pep
MFWSPIMGDNSGESEYVENNSVYSSITRLLKLLEMEEIFITNIKAYTNKL
AEKVKNLQAYIDSVDYEFQQSFEDREKYVGNPINAFSLVRRTHQDLPKWH
NYSQQIVGMEELFALEEIIAKVPDKKDMAYSLGEMHRIEQIYDLEAIELA
RGRIQGKQYDFRPSIRDCVALGEHKFKREDYQRASMWFRVAIKHEPEGNA
EIINSILGDPKVNLYTLYAKSMLIFGMIKSNPSMTIAEAKKISYEALNKA
SLADIKSLLNELLSQTDDEIVYEMNVNKTKPSDYEIGCRGQFLRRRNHVC
TYNFTITEFLKLAPLKQEVLNWDPYIVIYHDVLNDDEIDKLKNHLNDTDA
VEVNPIEKRIFQRINELTRLSFEHSDQQIVSKNGPRTHKHKKEYLKGTLL
FFLNNVELGGAMVFPKLKISVFPQKGSCLFWHNTLDPRSEPLECPVLQGN
KRVITQKGAYNGRPMQYKKAKSNQKFASFLDH
BO26933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18231-PB | 470 | CG18231-PB | 1..470 | 7..476 | 2452 | 100 | Plus |
| CG32201-PB | 520 | CG32201-PB | 25..505 | 15..456 | 758 | 36.7 | Plus |
| CG18233-PB | 515 | CG18233-PB | 23..495 | 14..456 | 722 | 34.2 | Plus |
| CG32199-PB | 509 | CG32199-PB | 2..494 | 22..456 | 547 | 29.8 | Plus |
| CG34345-PA | 504 | CG34345-PA | 16..489 | 1..456 | 521 | 28.1 | Plus |
