BO26934.complete Sequence
1771 bp assembled on 2010-07-02
GenBank Submission: KX799688
> BO26934.complete
GAAGTTATCAGTCGACATGGACAACTACAGATTCGGCACAGTGGACTACT
TAGTGTTAGTGGCCATGACGTTATTATCCACGGGAACGGGAATATATTTC
GGTGCCTTAAAGAAAAAACATAAAAACAAGAAAAGTGTTTCAGAAGACAA
TAGAAGGACCAATTTTGGATCTGAGAAGATAGATGAGTATCTTATGGGTT
CTCGAAATATGAAAGTGATCCCAGTATCCATCACTTTGTATCGGGTAACT
TCCATCATTGGAACTCCCTCTGAGATCTATCATTATGGCACCCAGTACTA
TCTCATTATCGTAGCCATTATTCTTCAAGGAATAGCCTTCTCCTATGTAT
ACTTACCAGTGTACTCAGCTCTGCAAATTGGATCTGCATACGAGTACTTG
GGATTGCGATTCAACTCGATTATTAGGACCACAGCATCTTTTATGTATGT
TTTTGGTATTCTTACTTACTTGCCATTCATTGTATATGTTCCGGCATTAT
CGTTAAGCCAGGTTTCTGGTCTCAATACCCATCTGATTGGACTGGTAATC
ATACTCGCTTGCGTCACCTACACATTTATGGGTGGCCTGAAGGCTGTGGT
CCACACGGATGTTTGGCAAGTGGCTGTTATGTTTCTCTCCCTGGTTGCGG
TTGCCTTTTTGGCCATATACTACTCTAATGGCTTGGTAGCTGTATTCGAC
GACGCGGAACAGGGTGGACGATTGATGCTGGCCAACACGAATCCATCTCC
CTATGTTCGCCATACAGTCTGGAGCGTTCTCATCGGTGGCTTTTCATTCT
GGACCTCAGTTAATGCCGGTGGTCAGCATATGGTGCAGCGATATATGTCA
CTACCTTCACTGAAGAAATCTAGACAGGCTTCATTCATCTTCACCATTGG
AGTGTCTATCTTTATCGCTCTTTGTTGCTTTATGGGTTTGCTACTTTTCT
CGAAATACAAGGACTGCGATCCTCGGAGTGCTGGCATGATTTTGAATGAC
GATCAACTTTTGCCCTTGTTTGTGGTTCAAAGTGTTGGCCATATTTACGG
AATGCCTGGTCTGTTTATAGCCGGAATATTCGGAGCAGGCCTAAGTTCAC
TTTCCTCGTGTTTCAATACGGTTTCAATGGTCTTCCTGGAAGATATAGTT
CGCGGATTTTTCAAGATGGAGCCTAGCGAAAGGCAGTCCACGATTCTGAT
TAAAACATGCATTATCTTCCAGGGAATTTTAGCCTTTCTTATAGTATTCT
TACTACAGCACTTGAGAGGCATTTTGAGTGTCTGCAATTCGATATCCTCG
ATAACGGCAGGCACTTCCTTTGGAGTATTCACATTAGGAATGTTGTTTCC
ATGGGCAAACACTATAGGCACAGCGGTCGGTGGATTGTCTAGTGTCCTAC
TGGCTGGATGGATTTCATTTGGATCGCAGATCGCCGCAGCATCGGGTCAA
CTGAAATCTGGAATGCTTCCCGTTTCCGTGAAGGAGTGTGTGGGAAATGT
GACTCTACCCGAAGACCCTTGGGTGGATCAGGATCAAGTGTTTCCTTTGT
ACCGTCTATCTTACCATTGGGTTAGTCCCATTGGAGTCGTCACAGCAGTT
GTGGTGGGAGCATTAGTATCCTTGATAACTAAGCCTGCAGATATCAAGAC
TCTTCATGCTGAACTTATATCCCCAGTGATCCATAGATTTCTTCCAAGGG
AATGCTTCAGAGGTCGCAATTTAAATGAGAGGACTGAAGAGAGCCTAATA
CAAGCAAGCTTTCTAGACCAT
BO26934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31262-RB | 1740 | CG31262-PB | 1..1737 | 17..1753 | 8685 | 100 | Plus |
| CG31262-RE | 1740 | CG31262-PE | 1..1737 | 17..1753 | 8685 | 100 | Plus |
| CG31262-RD | 387 | CG31262-PD | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31262-RB | 2163 | CG31262-RB | 302..2038 | 17..1753 | 8685 | 100 | Plus |
| CG31262-RE | 1988 | CG31262-RE | 127..1863 | 17..1753 | 8685 | 100 | Plus |
| CG31262-RF | 2001 | CG31262-RF | 127..1876 | 17..1753 | 8520 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17217361..17218053 | 1686..994 | 3465 | 100 | Minus |
| 3R | 32079331 | 3R | 17218109..17218523 | 994..580 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 17218931..17219091 | 394..234 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 17219161..17219282 | 233..112 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 17219337..17219432 | 112..17 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 17218576..17218645 | 581..512 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 17217241..17217309 | 1753..1685 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 17218811..17218878 | 460..393 | 340 | 100 | Minus |
| 2L | 23513712 | 2L | 8201023..8201366 | 1680..1337 | 310 | 72.7 | Minus |
| 3R | 32079331 | 3R | 17218703..17218754 | 512..461 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:11:22 has no hits.
BO26934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:39 Download gff for
BO26934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RB | 302..2038 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:08 Download gff for
BO26934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RE | 127..1863 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:47 Download gff for
BO26934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RE | 127..1863 | 17..1755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:47 Download gff for
BO26934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17217239..17217307 | 1687..1755 | 97 | <- | Minus |
| 3R | 17217361..17218052 | 995..1686 | 100 | <- | Minus |
| 3R | 17218109..17218522 | 581..994 | 100 | <- | Minus |
| 3R | 17218577..17218644 | 513..580 | 100 | <- | Minus |
| 3R | 17218703..17218754 | 461..512 | 100 | <- | Minus |
| 3R | 17218811..17218876 | 395..460 | 100 | <- | Minus |
| 3R | 17218931..17219091 | 234..394 | 100 | <- | Minus |
| 3R | 17219161..17219282 | 112..233 | 100 | <- | Minus |
| 3R | 17219338..17219432 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:08 Download gff for
BO26934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13042961..13043029 | 1687..1755 | 97 | <- | Minus |
| arm_3R | 13043083..13043774 | 995..1686 | 100 | <- | Minus |
| arm_3R | 13043831..13044244 | 581..994 | 100 | <- | Minus |
| arm_3R | 13044299..13044366 | 513..580 | 100 | <- | Minus |
| arm_3R | 13044425..13044476 | 461..512 | 100 | <- | Minus |
| arm_3R | 13044533..13044598 | 395..460 | 100 | <- | Minus |
| arm_3R | 13044653..13044813 | 234..394 | 100 | <- | Minus |
| arm_3R | 13044883..13045004 | 112..233 | 100 | <- | Minus |
| arm_3R | 13045060..13045154 | 17..111 | 100 | | Minus |
BO26934.pep Sequence
Translation from 16 to 1771
> BO26934.pep
MDNYRFGTVDYLVLVAMTLLSTGTGIYFGALKKKHKNKKSVSEDNRRTNF
GSEKIDEYLMGSRNMKVIPVSITLYRVTSIIGTPSEIYHYGTQYYLIIVA
IILQGIAFSYVYLPVYSALQIGSAYEYLGLRFNSIIRTTASFMYVFGILT
YLPFIVYVPALSLSQVSGLNTHLIGLVIILACVTYTFMGGLKAVVHTDVW
QVAVMFLSLVAVAFLAIYYSNGLVAVFDDAEQGGRLMLANTNPSPYVRHT
VWSVLIGGFSFWTSVNAGGQHMVQRYMSLPSLKKSRQASFIFTIGVSIFI
ALCCFMGLLLFSKYKDCDPRSAGMILNDDQLLPLFVVQSVGHIYGMPGLF
IAGIFGAGLSSLSSCFNTVSMVFLEDIVRGFFKMEPSERQSTILIKTCII
FQGILAFLIVFLLQHLRGILSVCNSISSITAGTSFGVFTLGMLFPWANTI
GTAVGGLSSVLLAGWISFGSQIAAASGQLKSGMLPVSVKECVGNVTLPED
PWVDQDQVFPLYRLSYHWVSPIGVVTAVVVGALVSLITKPADIKTLHAEL
ISPVIHRFLPRECFRGRNLNERTEESLIQASFLDH
BO26934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31262-PB | 579 | CG31262-PB | 1..579 | 1..579 | 2958 | 100 | Plus |
| CG31262-PE | 579 | CG31262-PE | 1..579 | 1..579 | 2958 | 100 | Plus |
| SLC5A11-PA | 600 | CG8451-PA | 9..600 | 1..581 | 2031 | 64 | Plus |
| CG33124-PD | 588 | CG33124-PD | 1..578 | 1..571 | 1812 | 59.2 | Plus |
| CG31668-PC | 590 | CG31668-PC | 1..582 | 1..573 | 1788 | 56.5 | Plus |
