BO26937.complete Sequence
1579 bp assembled on 2010-07-15
GenBank Submission: KX797132
> BO26937.complete
GAAGTTATCAGTCGACATGTTTATCATCCTATCAATCTGCCTAATTTCAC
TTGGTCCTCCAATAGGCCTTTGTGAAATTACAAATTCTGCAATGTCCATA
GCTGGAATGAAAGAGCTTGTGGACTTGGAGGGTTTTTTCATCAGCGAAAT
GGAGAGCTACACTGCAGCCCTGAAGAATAAAATCGATCTGATGGAGAGTT
TGCTACAAGAAGTACAATCCAAACGAGAGATTTCCCGAAGGAACCCAGAA
GAGTTCGTTGCTCATCCCCTCAATGCATTTTCCCTCATTCGACGGCTGCA
CGAGGATTGGACCCAAGCCGAGCTATTGATGTTGAATCAAGTTGGCTTGG
AACACCTTCAAGCTATTGAAACTGGCTTGGAGGAAGCCCAGCCAAGCGAT
AATGATCTTAACGATGCCATCGGCGGAATAATCTCACTGCAACAATTCTA
CAATCTACAGCCAAGTGACATAGCCAATGGATTACTGATGGGACAGCAAT
ACAATGCCAGCTTGACCACACTTAACTGTCAGGCTTTGGCCAACGCGTGT
ATGAATTTTAATTACGATAAGTATGCCTTAAATTGGTTCAAAGCTGCTGT
AGATCACTACAATGACGATCGAGATGGACAGGTCTATAGGGAGGTATTTG
ATTTTAGGCTGCCTGATTTATACATAAATTACACCTCAGTTTTGGTAACT
AAAGGTTTTCGCAAAGCCGCATGGAAAGTCCTGCAGGACGTCGCTGATTT
AGACGCTACTCTCTGGTTGCTTCGCAAAGATATTTATGAGGTAGGAAAAA
TCGATGTTCCTGATCCCACGTTTATCATAACACCATGGTTCGATGTTACT
GGTTGTCTAAGAGTTGGGCAGACCAGCCAACATCTCAGCTGTCACTACGA
AAAGAACACGTCTGAATTCCTTAGGATTGCTCCGCTTAAGGTGGAAACGC
TTAGTTTGAAGCCGCATATTGTTTTGTATCATGATGTGATCTATGACAGC
GAGATCTCAAAAGTCAAAAATATTTCACTGCCTTCACTAAAGAGTCCTTT
GCGAATTCTCTATGCTATTGACTATAACCTAAAGTTCGCCAAAATTCGCG
AGGATCACCAGAGCCCTCTAAGCCTGCGAATTAAGGACATGACAGGAGAG
GACGTGCAAGAGGACACGGATTTTCAGATAGATAACTACGGTATCTGTGG
GTTTAGAAATTTCCATACTGACAATATAGAATTGCAGGATCAAACGGCGG
AACTTGGCGATCGCTTAACGAGCATAATGTTTTTTATGAACGATGTGGCT
CAAGGTGGTGCCTTGGCTTTTCCAAACTTAAATCTCACAATTTGGCCACA
AAAAGGCAGCGCTTTGGTTTGGAGAAACCTGGACCATAGAATGCAGCCTA
ACCAAGATCTTTTGCACGTATCATGTCCTGTGGTAGTGGGCTCAAAATGG
ACACTCGTCAAATGGTTACACGAAAGACCTCAAATGTTCTCCAGACCTTG
TACAACAGGCCGGAAATTTAAATCGCATGACCAAAGCATGAAATTTAGAG
CGTTAAATAAAGCAAGCTTTCTAGACCAT
BO26937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18234-RC | 1548 | CG18234-PC | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18234-RC | 1575 | CG18234-RC | 15..1560 | 16..1561 | 7730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18604463..18604890 | 820..1247 | 2140 | 100 | Plus |
| 3L | 28110227 | 3L | 18603671..18603978 | 197..504 | 1540 | 100 | Plus |
| 3L | 28110227 | 3L | 18604030..18604236 | 500..706 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 18603439..18603625 | 16..202 | 920 | 99.5 | Plus |
| 3L | 28110227 | 3L | 18605054..18605229 | 1276..1451 | 835 | 98.3 | Plus |
| 3L | 28110227 | 3L | 18604287..18604406 | 701..820 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 18605291..18605400 | 1452..1561 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 18604950..18604989 | 1246..1285 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 3608..3644 | 349..385 | 113 | 78.4 | Plus |
BO26937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:53:40 Download gff for
BO26937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 22..1560 | 23..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:56 Download gff for
BO26937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 22..1560 | 23..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:34 Download gff for
BO26937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 22..1560 | 23..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:34 Download gff for
BO26937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18604291..18604406 | 705..820 | 100 | -> | Plus |
| 3L | 18603446..18603621 | 23..198 | 100 | -> | Plus |
| 3L | 18603673..18603978 | 199..504 | 100 | -> | Plus |
| 3L | 18604035..18604234 | 505..704 | 100 | -> | Plus |
| 3L | 18604464..18604889 | 821..1246 | 100 | -> | Plus |
| 3L | 18604951..18604989 | 1247..1285 | 100 | -> | Plus |
| 3L | 18605064..18605229 | 1286..1451 | 100 | -> | Plus |
| 3L | 18605291..18605400 | 1452..1563 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:56 Download gff for
BO26937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18596546..18596721 | 23..198 | 100 | -> | Plus |
| arm_3L | 18596773..18597078 | 199..504 | 100 | -> | Plus |
| arm_3L | 18597135..18597334 | 505..704 | 100 | -> | Plus |
| arm_3L | 18597391..18597506 | 705..820 | 100 | -> | Plus |
| arm_3L | 18597564..18597989 | 821..1246 | 100 | -> | Plus |
| arm_3L | 18598051..18598089 | 1247..1285 | 100 | -> | Plus |
| arm_3L | 18598164..18598329 | 1286..1451 | 100 | -> | Plus |
| arm_3L | 18598391..18598500 | 1452..1563 | 98 | | Plus |
BO26937.pep Sequence
Translation from 16 to 1579
> BO26937.pep
MFIILSICLISLGPPIGLCEITNSAMSIAGMKELVDLEGFFISEMESYTA
ALKNKIDLMESLLQEVQSKREISRRNPEEFVAHPLNAFSLIRRLHEDWTQ
AELLMLNQVGLEHLQAIETGLEEAQPSDNDLNDAIGGIISLQQFYNLQPS
DIANGLLMGQQYNASLTTLNCQALANACMNFNYDKYALNWFKAAVDHYND
DRDGQVYREVFDFRLPDLYINYTSVLVTKGFRKAAWKVLQDVADLDATLW
LLRKDIYEVGKIDVPDPTFIITPWFDVTGCLRVGQTSQHLSCHYEKNTSE
FLRIAPLKVETLSLKPHIVLYHDVIYDSEISKVKNISLPSLKSPLRILYA
IDYNLKFAKIREDHQSPLSLRIKDMTGEDVQEDTDFQIDNYGICGFRNFH
TDNIELQDQTAELGDRLTSIMFFMNDVAQGGALAFPNLNLTIWPQKGSAL
VWRNLDHRMQPNQDLLHVSCPVVVGSKWTLVKWLHERPQMFSRPCTTGRK
FKSHDQSMKFRALNKASFLDH
BO26937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18234-PC | 515 | CG18234-PC | 1..515 | 1..515 | 2706 | 100 | Plus |
| CG18233-PB | 515 | CG18233-PB | 34..509 | 27..496 | 615 | 31.8 | Plus |
| CG15539-PB | 509 | CG15539-PB | 29..507 | 23..497 | 578 | 30.2 | Plus |
| CG32201-PB | 520 | CG32201-PB | 36..518 | 27..495 | 578 | 31.9 | Plus |
| CG15539-PC | 508 | CG15539-PC | 29..506 | 23..497 | 576 | 30.2 | Plus |
