BO26942.complete Sequence
1075 bp assembled on 2010-07-02
GenBank Submission: KX797003
> BO26942.complete
GAAGTTATCAGTCGACATGGACGCCCCCGACGCCCCGCACACGCCCAAGT
ACATGGACGGCGGGAACACGGCGGCCAGCGTCACCCCCGGCATTAACATC
CCGGGAAAGTCCGCCTTCGTGGAGCTGCAGCAGCACGCCGCCGCCGGGTA
CGGCGGCATCCGGAGCACCTATCAGCATTTCGGACCGCAGGGCGGCCAGG
ATTCCGGCTTCCCCAGTCCGCGCAGCGCCCTCGGCTACCCGTTCCCGCCA
ATGCACCAGAACTCCTACTCCGGCTACCATCTGGGCAGCTACGCCCCGCC
CTGCGCCAGTCCACCGAAGGATGACTTCTCCATCTCCGATAAGTGCGAGG
ACTCCGGCCTCCGCGTCAACGGCAAGGGCAAGAAGATGCGCAAGCCCCGC
ACCATCTACAGCTCGCTGCAACTGCAGCAGCTCAACCGCCGCTTCCAGCG
TACCCAATACCTGGCCCTGCCGGAGCGAGCGGAGCTGGCGGCGAGTCTGG
GCCTCACGCAAACGCAGGTGAAAATCTGGTTCCAGAACCGACGCTCCAAG
TACAAAAAGATGATGAAGGCGGCCCAGGGCCCGGGCACCAACAGCGGCAT
GCCTCTGGGCGGGGGAGGACCCAATCCCGGCCAGCATAGCCCCAATCAAA
TGCACAGTGGTGAGTTAGCGAACGGAAGATTCCTCTGGGCGGCCTTAGAA
ACTAATGGAACTCTCGCTCTTGTCCATTCCACAGGCGGTAATAACGGCGG
TGGCTCGAACAGCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTC
CAACGCCATCGAGTACACCCGTGTCCGAGCTTTCACCTGAATTCCCACCA
ACGGGCCTCAGTCCGCCGACGCAAGCGCCGTGGGACCAGAAACCGCACTG
GATCGACCACAAGCCGCCGCCCCAAATGACGCCACAACCACCTCATCCAG
CGGCAACGCTACATCCGCAGACGCACCACCACAACCCGCCGCCCCAGATG
GGTGGCTATGTGCCCCAGTACTGGTACCAGCCCGAGACGAATCCATCACT
AGTGACGGCAAGCTTTCTAGACCAT
BO26942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-RC | 1044 | CG3629-PC | 1..1041 | 17..1057 | 5190 | 99.9 | Plus |
| Dll-RA | 984 | CG3629-PA | 1..644 | 17..660 | 3205 | 99.8 | Plus |
| Dll-RB | 969 | CG3629-PB | 1..644 | 17..660 | 3205 | 99.8 | Plus |
| Dll-RA | 984 | CG3629-PA | 643..965 | 734..1056 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-RC | 2244 | CG3629-RC | 615..1656 | 16..1057 | 5195 | 99.9 | Plus |
| Dll-RA | 3094 | CG3629-RA | 615..1259 | 16..660 | 3210 | 99.8 | Plus |
| Dll-RB | 2169 | CG3629-RB | 615..1259 | 16..660 | 3210 | 99.8 | Plus |
| Dll-RA | 3094 | CG3629-RA | 1258..1580 | 734..1056 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24833405..24833730 | 514..839 | 1630 | 100 | Plus |
| 2R | 25286936 | 2R | 24833796..24834014 | 839..1057 | 1095 | 100 | Plus |
| 2R | 25286936 | 2R | 24819813..24820011 | 323..521 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 24817593..24817769 | 147..323 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 24815436..24815569 | 16..149 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:09:55 has no hits.
BO26942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:27 Download gff for
BO26942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 608..1648 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:28 Download gff for
BO26942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 616..1656 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:15 Download gff for
BO26942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 616..1656 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:15 Download gff for
BO26942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24815437..24815567 | 17..147 | 99 | -> | Plus |
| 2R | 24817594..24817769 | 148..323 | 100 | -> | Plus |
| 2R | 24819814..24820007 | 324..517 | 100 | -> | Plus |
| 2R | 24833409..24833730 | 518..839 | 100 | -> | Plus |
| 2R | 24833797..24834014 | 840..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:28 Download gff for
BO26942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20721320..20721537 | 840..1059 | 99 | | Plus |
| arm_2R | 20702960..20703090 | 17..147 | 99 | -> | Plus |
| arm_2R | 20705117..20705292 | 148..323 | 100 | -> | Plus |
| arm_2R | 20707337..20707530 | 324..517 | 100 | -> | Plus |
| arm_2R | 20720932..20721253 | 518..839 | 100 | -> | Plus |
BO26942.pep Sequence
Translation from 16 to 1075
> BO26942.pep
MDAPDAPHTPKYMDGGNTAASVTPGINIPGKSAFVELQQHAAAGYGGIRS
TYQHFGPQGGQDSGFPSPRSALGYPFPPMHQNSYSGYHLGSYAPPCASPP
KDDFSISDKCEDSGLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLA
LPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKAAQGPGTNSGMPLGGG
GPNPGQHSPNQMHSGELANGRFLWAALETNGTLALVHSTGGNNGGGSNSG
SPSHYLPPGHSPTPSSTPVSELSPEFPPTGLSPPTQAPWDQKPHWIDHKP
PPQMTPQPPHPAATLHPQTHHHNPPPQMGGYVPQYWYQPETNPSLVTASF
LDH
BO26942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-PC | 347 | CG3629-PC | 1..347 | 1..347 | 1930 | 100 | Plus |
| Dll-PB | 322 | CG3629-PB | 1..322 | 1..347 | 1765 | 92.8 | Plus |
| Dll-PA | 327 | CG3629-PA | 1..322 | 1..347 | 1765 | 92.8 | Plus |
| otp-PC | 271 | CG10036-PC | 12..225 | 123..339 | 209 | 29.6 | Plus |
| otp-PJ | 374 | CG10036-PJ | 115..328 | 123..339 | 209 | 29.6 | Plus |
