BO26948.complete Sequence
718 bp assembled on 2010-07-02
GenBank Submission: KX797203
> BO26948.complete
GAAGTTATCAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGT
CGACATCTGGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCC
ACCGGAGATGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCA
TCCCGATAAGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAG
TCAACCGGGCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATAC
GACAACTACGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGA
GAATGTCAACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGG
TTATCTGCTGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGC
TGCTGTTGCAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTC
GCACGATCAGTATTCACATCTGAATGAGGACGTTGACCTAGACGACGTTA
ACTTGGGTGCGGGCGGAGCCCCCGTTACCTCACAGCCGCGGGAACAGGCC
GGAGGACAGCCTGTTTTCGCCATGCCGCCGCCCAGTGGAGCCGTGGGAGT
AAACCCCTTCACCGGCGCCCCTGTAGCAGCTAACGAGAATACGTCGCTAA
ACACAACGGAGCAGACCACTTACACGCCAGATATGGTTAATCAAAAATAT
GCAAGCTTTCTAGACCAT
BO26948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csp-RC | 687 | CG6395-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
Csp-RA | 672 | CG6395-PA | 1..668 | 17..684 | 3325 | 99.9 | Plus |
Csp-RE | 735 | CG6395-PE | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csp-RC | 2226 | CG6395-RC | 186..869 | 17..700 | 3420 | 100 | Plus |
Csp-RA | 2832 | CG6395-RA | 186..853 | 17..684 | 3325 | 99.9 | Plus |
Csp-RE | 2895 | CG6395-RE | 186..644 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22271558..22271766 | 476..684 | 1030 | 99.5 | Plus |
3L | 28110227 | 3L | 22269572..22269727 | 189..344 | 780 | 100 | Plus |
3L | 28110227 | 3L | 22269353..22269491 | 52..190 | 695 | 100 | Plus |
3L | 28110227 | 3L | 22269787..22269921 | 342..476 | 675 | 100 | Plus |
3L | 28110227 | 3L | 22267753..22267788 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:14 has no hits.
BO26948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:29 Download gff for
BO26948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RC | 493..1176 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:38 Download gff for
BO26948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RC | 186..869 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:22 Download gff for
BO26948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RC | 186..869 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:22 Download gff for
BO26948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22267753..22267787 | 17..51 | 100 | -> | Plus |
3L | 22269353..22269491 | 52..190 | 100 | -> | Plus |
3L | 22269574..22269726 | 191..343 | 100 | -> | Plus |
3L | 22269789..22269920 | 344..475 | 100 | -> | Plus |
3L | 22271558..22271762 | 476..680 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:38 Download gff for
BO26948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22260853..22260887 | 17..51 | 100 | -> | Plus |
arm_3L | 22262453..22262591 | 52..190 | 100 | -> | Plus |
arm_3L | 22262674..22262826 | 191..343 | 100 | -> | Plus |
arm_3L | 22262889..22263020 | 344..475 | 100 | -> | Plus |
arm_3L | 22264658..22264862 | 476..680 | 100 | -> | Plus |
BO26948.pep Sequence
Translation from 16 to 718
> BO26948.pep
MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNP
DNVDAADKFKEVNRAHSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAY
FVVTSPAVKAVVICCAVITGCCCCCCCCCCCNFCCGKFKPPVNESHDQYS
HLNEDVDLDDVNLGAGGAPVTSQPREQAGGQPVFAMPPPSGAVGVNPFTG
APVAANENTSLNTTEQTTYTPDMVNQKYASFLDH
BO26948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csp-PC | 228 | CG6395-PC | 1..228 | 1..228 | 1250 | 100 | Plus |
Csp-PF | 249 | CG6395-PF | 1..249 | 1..228 | 1218 | 91.6 | Plus |
Csp-PB | 249 | CG6395-PB | 1..249 | 1..228 | 1218 | 91.6 | Plus |
Csp-PA | 223 | CG6395-PA | 1..221 | 1..221 | 1212 | 100 | Plus |
Csp-PE | 244 | CG6395-PE | 1..242 | 1..221 | 1180 | 91.3 | Plus |