Clone BO26948 Report

Search the DGRC for BO26948

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:269
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCsp-RC
Protein status:BO26948.pep: Imported from assembly
Sequenced Size:718

Clone Sequence Records

BO26948.complete Sequence

718 bp assembled on 2010-07-02

GenBank Submission: KX797203

> BO26948.complete
GAAGTTATCAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGT
CGACATCTGGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCC
ACCGGAGATGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCA
TCCCGATAAGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAG
TCAACCGGGCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATAC
GACAACTACGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGA
GAATGTCAACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGG
TTATCTGCTGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGC
TGCTGTTGCAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTC
GCACGATCAGTATTCACATCTGAATGAGGACGTTGACCTAGACGACGTTA
ACTTGGGTGCGGGCGGAGCCCCCGTTACCTCACAGCCGCGGGAACAGGCC
GGAGGACAGCCTGTTTTCGCCATGCCGCCGCCCAGTGGAGCCGTGGGAGT
AAACCCCTTCACCGGCGCCCCTGTAGCAGCTAACGAGAATACGTCGCTAA
ACACAACGGAGCAGACCACTTACACGCCAGATATGGTTAATCAAAAATAT
GCAAGCTTTCTAGACCAT

BO26948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-RC 687 CG6395-PC 1..684 17..700 3420 100 Plus
Csp-RA 672 CG6395-PA 1..668 17..684 3325 99.9 Plus
Csp-RE 735 CG6395-PE 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-RC 2226 CG6395-RC 186..869 17..700 3420 100 Plus
Csp-RA 2832 CG6395-RA 186..853 17..684 3325 99.9 Plus
Csp-RE 2895 CG6395-RE 186..644 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22271558..22271766 476..684 1030 99.5 Plus
3L 28110227 3L 22269572..22269727 189..344 780 100 Plus
3L 28110227 3L 22269353..22269491 52..190 695 100 Plus
3L 28110227 3L 22269787..22269921 342..476 675 100 Plus
3L 28110227 3L 22267753..22267788 17..52 180 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:10:14 has no hits.

BO26948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:29 Download gff for BO26948.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 493..1176 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:38 Download gff for BO26948.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 186..869 17..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:22 Download gff for BO26948.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 186..869 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:22 Download gff for BO26948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22267753..22267787 17..51 100 -> Plus
3L 22269353..22269491 52..190 100 -> Plus
3L 22269574..22269726 191..343 100 -> Plus
3L 22269789..22269920 344..475 100 -> Plus
3L 22271558..22271762 476..680 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:38 Download gff for BO26948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22260853..22260887 17..51 100 -> Plus
arm_3L 22262453..22262591 52..190 100 -> Plus
arm_3L 22262674..22262826 191..343 100 -> Plus
arm_3L 22262889..22263020 344..475 100 -> Plus
arm_3L 22264658..22264862 476..680 100 -> Plus

BO26948.pep Sequence

Translation from 16 to 718

> BO26948.pep
MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNP
DNVDAADKFKEVNRAHSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAY
FVVTSPAVKAVVICCAVITGCCCCCCCCCCCNFCCGKFKPPVNESHDQYS
HLNEDVDLDDVNLGAGGAPVTSQPREQAGGQPVFAMPPPSGAVGVNPFTG
APVAANENTSLNTTEQTTYTPDMVNQKYASFLDH

BO26948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-PC 228 CG6395-PC 1..228 1..228 1250 100 Plus
Csp-PF 249 CG6395-PF 1..249 1..228 1218 91.6 Plus
Csp-PB 249 CG6395-PB 1..249 1..228 1218 91.6 Plus
Csp-PA 223 CG6395-PA 1..221 1..221 1212 100 Plus
Csp-PE 244 CG6395-PE 1..242 1..221 1180 91.3 Plus