BO26956.complete Sequence
1435 bp assembled on 2010-07-02
GenBank Submission: KX796336
> BO26956.complete
GAAGTTATCAGTCGACATGGCATACCACCTCGAAGCGATTTCTTCGTTTC
TGTATGTGGGCCTTGGTTGCCTGATTGCCTCCTCTGTGGCACTAAGTACA
GATACTGGAAGTGAAGGCAACGCCGGTAACGTCGGTGGCTCAACCCTAAA
TAATGTCATCAGCGAAGATCCCGAGTTCACGGATGTGATCGAAAATATTA
CAGTGCCTGCGGGGCGTAATGTAAAACTGGCTTGTTCAGTCAAGAACCTG
GGATCCTATAAGGTCGCGTGGATGCACTTCGAGCAGTCGGCCATTCTCAC
AGTTCACAACCACGTGATAACGCGTAATCCAAGGATTAGTGTCACCCACG
ATAAGCATGACAAGCACCGCACCTGGTTCCTGCATATCAACAATGTCCAG
GAGGAGGACAGGGGCCGATACATGTGCCAAATCAATACGGTTACGGCCAA
GACCCAGTATGGATTTGTCAAAGTAGTGGTGCCGCCGAATATAGACGACG
CTCTGACCTCCAGTGACATCATCGTGCGCGAGGGCGATAACGTTACGCTA
CGCTGCAAGGCGAAAGGTAGTCCGGAGCCGACCATCAAATGGAAACGCGA
TGACGGCAACAAAATCGTTATTAACAAGACGCTCGAGGTGCACGACTTGG
AGACGGATTCCCTGGAGCTGGAGCGGATTTCGCGACTGCACATGGGCGCC
TACCTGTGCATCGCATCGAATGGTGTGCCGCCAAGTGTGTCCAAGCGGAT
CAAAGTCAGCGTGGACTTTTCGCCCATGGTCTGGATACCGCATCAGCTGG
TGGGTATTCCCATTGGATTCAACATCACCCTGGAATGCTTCATCGAGGCG
AATCCGACCTCACTTAACTATTGGACGCGCGAAAACGATCAAATGATCAC
TGAGTCATCAAAGTACAAAACCGAAACCATTCCCGGCCATCCGTCGTACA
AGGCGACCATGCGGCTCACGATTACCAACGTTCAGAGCAGCGATTATGGC
AACTACAAGTGCGTCGCCAAAAATCCTCGGGGCGACATGGACGGCAACAT
AAAGCTGTACATGTCGAGTCCGCCGACAACACAACCGCCGCCCACAACCA
CAACGCTGCGGCGGACGACAACAACCGCGGCGGAAATCGCACTGGACGGC
TACATCAACACGCCCCTGAATGGCAATGGCATTGGCATTGTGGGCGAAGG
ACCCACAAATTCGGTGATTGCGTCCGGCAAATCGAGCATTAAATACCTAT
CGAATCTGAACGAGATCGACAAGTCGAAGCAGAAGCTGACGGGCAGCAGT
CCCAAGGGATTCGATTGGTCCAAGGGCAAGAGCAGCGGGAGTCATGGCAA
CCTAATGGCGTCCAGTTGGCCCCTCATCTGCTGCATCCTCGCACTGCTGA
CGACACACTCGTGTGGTGCAAGCTTTCTAGACCAT
BO26956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42368-RA | 1404 | CG42368-PA | 1..1401 | 17..1417 | 7005 | 100 | Plus |
| CG31708-RC | 1539 | CG31708-PC | 330..1043 | 163..876 | 930 | 75.4 | Plus |
| CG31708-RB | 1599 | CG31708-PB | 330..1043 | 163..876 | 930 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42368-RA | 3150 | CG42368-RA | 678..2078 | 17..1417 | 7005 | 100 | Plus |
| CG31708-RC | 3384 | CG31708-RC | 904..1617 | 163..876 | 930 | 75.4 | Plus |
| CG31708-RB | 3562 | CG31708-RB | 1022..1735 | 163..876 | 930 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6391128..6391346 | 479..261 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 6378843..6379027 | 1417..1233 | 925 | 100 | Minus |
| 2L | 23513712 | 2L | 6379110..6379280 | 1232..1062 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 6386089..6386248 | 638..479 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 6385684..6385834 | 918..768 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 6380648..6380790 | 1061..919 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 6408245..6408383 | 155..17 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 6385903..6386032 | 767..638 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 6394835..6394944 | 264..155 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 9060727..9060928 | 462..261 | 530 | 84.2 | Minus |
| 2L | 23513712 | 2L | 9059471..9059561 | 767..677 | 260 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:44:17 has no hits.
BO26956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:15 Download gff for
BO26956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 658..2058 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:39 Download gff for
BO26956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 678..2078 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:33 Download gff for
BO26956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 678..2078 | 17..1419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:33 Download gff for
BO26956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6391128..6391344 | 263..479 | 100 | <- | Minus |
| 2L | 6394837..6394943 | 156..262 | 100 | <- | Minus |
| 2L | 6408245..6408383 | 17..155 | 100 | | Minus |
| 2L | 6385903..6386031 | 639..767 | 100 | <- | Minus |
| 2L | 6385684..6385834 | 768..918 | 100 | <- | Minus |
| 2L | 6386089..6386247 | 480..638 | 100 | <- | Minus |
| 2L | 6378840..6379027 | 1233..1419 | 98 | <- | Minus |
| 2L | 6379110..6379280 | 1062..1232 | 100 | <- | Minus |
| 2L | 6380648..6380790 | 919..1061 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:39 Download gff for
BO26956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6408245..6408383 | 17..155 | 100 | | Minus |
| arm_2L | 6378840..6379027 | 1233..1419 | 98 | <- | Minus |
| arm_2L | 6379110..6379280 | 1062..1232 | 100 | <- | Minus |
| arm_2L | 6380648..6380790 | 919..1061 | 100 | <- | Minus |
| arm_2L | 6385684..6385834 | 768..918 | 100 | <- | Minus |
| arm_2L | 6385903..6386031 | 639..767 | 100 | <- | Minus |
| arm_2L | 6386089..6386247 | 480..638 | 100 | <- | Minus |
| arm_2L | 6391128..6391344 | 263..479 | 100 | <- | Minus |
| arm_2L | 6394837..6394943 | 156..262 | 100 | <- | Minus |
BO26956.pep Sequence
Translation from 16 to 1435
> BO26956.pep
MAYHLEAISSFLYVGLGCLIASSVALSTDTGSEGNAGNVGGSTLNNVISE
DPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHV
ITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAKTQYGF
VKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKI
VINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSVD
FSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKY
KTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLYMS
SPPTTQPPPTTTTLRRTTTTAAEIALDGYINTPLNGNGIGIVGEGPTNSV
IASGKSSIKYLSNLNEIDKSKQKLTGSSPKGFDWSKGKSSGSHGNLMASS
WPLICCILALLTTHSCGASFLDH
BO26956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42368-PA | 467 | CG42368-PA | 1..467 | 1..467 | 2464 | 100 | Plus |
| CG31708-PB | 532 | CG31708-PB | 72..525 | 15..469 | 1321 | 58.7 | Plus |
| CG31708-PA | 532 | CG31708-PA | 72..525 | 15..469 | 1321 | 58.7 | Plus |
| CG31708-PC | 512 | CG31708-PC | 72..505 | 15..469 | 1288 | 58 | Plus |
| CG34391-PE | 469 | CG34391-PE | 36..428 | 44..446 | 816 | 41 | Plus |
