BO26960.complete Sequence
1885 bp assembled on 2010-07-15
GenBank Submission: KX795179
> BO26960.complete
GAAGTTATCAGTCGACATGCTGAAAACTGTGACAACAGCAATGGCTGCCG
GCGATGACGATGTCCCAGCGAGCATTTTGGAAATAGAACTGCCAGCCATT
TTGCTCAACGAGAGCCTCTTCATCGAGCTGAATGGCAATCTCACCCAGCT
GGTGGACACGACTAGCAATCTCAGCCAAATCGTCTGGAATCGCAGCATAA
ACGGCAATGGAAACAGCAACACTTTCGACCTGGTCGATGACGAACAAGAG
CGGGCGGCGGTCGAGTTTTGGCTACTAGTCAAAATGATCGCCATGGCCGT
GGTGCTGGGACTCATGATACTCGTCACCATCATAGGCAACGTATTCGTAA
TTGCCGCCATTATACTCGAGAGAAACTTGCAGAATGTTGCCAATTATTTG
GTTGCATCTCTGGCAGTGGCTGATTTATTTGTTGCCTGTCTTGTCATGCC
GCTTGGCGCCGTCTACGAGATAAGTAATGGATGGATATTGGGACCGGAAC
TGTGCGACATTTGGACGTCTTGCGATGTCCTTTGCTGCACAGCATCCATA
CTGCACCTGGTGGCCATTGCGGCGGACAGATATTGGACCGTGACCAATAT
CGACTACAACAATCTGCGGACACCGCGACGCGTATTCCTCATGATTTTCT
GCGTCTGGTTTGCGGCGCTGATTGTTTCCTTGGCCCCCCAATTTGGCTGG
AAGGATCCGGATTACATGAAGCGCATCGAGGAGCAGCACTGCATGGTGTC
ACAGGATGTGGGCTATCAGATATTTGCCACCTGTTGCACTTTCTATGTGC
CGCTGCTGGTGATTCTGTTTCTTTACTGGAAAATCTACATTATTGCCAGG
AAGCGCATCCAACGACGCGCCCAGAAGTCATTCAATGTCACACTAACCGA
GACTGACTGCGATTCGGCGGTGCGGGAGCTGAAGAAGGAGCGCAGCAAGC
GACGGGCGGAGCGCAAGCGTCTGGAGGCGGGCGAGCGGACACCAGTGGAC
GGCGACGGGACGGGCGGACAGTTGCAGCGACGTACCCGCAAACGGATGCG
TATATGTTTTGGCCGCAACACGAACACGGCCAATGTGGTGGCGGGATCGG
AGGGCGCGGTGGCCAGATCGATGGCCGCCATTGCCGTGGATTTCGCCAGT
TTGGCCATTACGCGCGAGGAGACCGAGTTCAGCACCAGCAACTACGACAA
CAAAAGCCACGCGGGCACCGAACTAACCACCGTGTCCAGCGATGCGGATG
ATTATCGCACCAGCAACGCGAATGAAATCATCACGCTGTCGCAGCAGGTG
GCCCATGCCACGCAGCACCATCTGATAGCCTCGCATCTGAATGCCATTAC
GCCGCTGGCCCAGTCCATCGCCATGGGTGGTGTTGGTTGCCTGACCACGA
CCACGCCATCGGAGAAGGCACTGTCAGGAGCAGGAACGGTAGCGGGAGCC
GTAGCTGGCGGAAGTGGAAGCGGAAGTGGTGAGGAGGGAGCCGGAACGGA
GGGCAAGAATGCCGGAGTGGGGCTGGGCGGAGTGCTGGCCAGCATTGCCA
ATCCGCACCAGAAACTGGCCAAGCGGCGACAGCTCCTGGAGGCGAAGAGG
GAGAGAAAGGCCGCCCAGACGCTGGCCATCATCACCGGCGCCTTCGTCAT
CTGCTGGCTGCCATTCTTCGTAATGGCCCTCACCATGAGCCTGTGCAAGG
AGTGCGAGATCCACACGGCGGTGGCATCGCTCTTCCTCTGGCTGGGCTAC
TTCAACTCGACCTTGAATCCGGTCATCTACACCATCTTCAATCCAGAATT
TCGACGGGCCTTCAAGAGGATTCTCTTCGGTCGAAAGGCTGCCGCTCGAG
CGCGCAGTGCGAAAATTGCAAGCTTTCTAGACCAT
BO26960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT1B-RE | 1890 | CG15113-PE | 1..1851 | 17..1867 | 9255 | 100 | Plus |
| 5-HT1B-RA | 1854 | CG15113-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
| 5-HT1B-RD | 1689 | CG15113-PD | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT1B-RE | 4026 | CG15113-RE | 909..2763 | 13..1867 | 9260 | 99.9 | Plus |
| 5-HT1B-RA | 2980 | CG15113-RA | 909..2763 | 13..1867 | 9260 | 99.9 | Plus |
| 5-HT1B-RD | 3861 | CG15113-RD | 909..1983 | 13..1087 | 5360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19023860..19024380 | 1773..1253 | 2605 | 100 | Minus |
| 2R | 25286936 | 2R | 19024645..19024989 | 1252..908 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 19028614..19028940 | 339..13 | 1620 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19026333..19026526 | 769..576 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 19025878..19026017 | 907..768 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 19027167..19027309 | 476..334 | 700 | 99.3 | Minus |
| 2R | 25286936 | 2R | 19026608..19026719 | 579..468 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 19023588..19023684 | 1867..1771 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 19118762..19118996 | 1539..1773 | 395 | 77.9 | Plus |
| 2R | 25286936 | 2R | 19096412..19096500 | 482..570 | 235 | 84.3 | Plus |
| 3L | 28110227 | 3L | 22063975..22064053 | 1738..1816 | 230 | 86.1 | Plus |
| 2R | 25286936 | 2R | 19108813..19108931 | 641..759 | 220 | 79 | Plus |
Blast to na_te.dros performed 2014-11-28 05:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4471..4507 | 629..593 | 113 | 78.4 | Minus |
BO26960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:46:55 Download gff for
BO26960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RA | 42..1892 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:34 Download gff for
BO26960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RA | 913..2763 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:18 Download gff for
BO26960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RA | 913..2763 | 17..1869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:18 Download gff for
BO26960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19023585..19023683 | 1772..1869 | 97 | <- | Minus |
| 2R | 19023862..19024380 | 1253..1771 | 100 | <- | Minus |
| 2R | 19024645..19024989 | 908..1252 | 100 | <- | Minus |
| 2R | 19025878..19026015 | 770..907 | 100 | <- | Minus |
| 2R | 19026333..19026522 | 580..769 | 100 | <- | Minus |
| 2R | 19026608..19026717 | 470..579 | 100 | <- | Minus |
| 2R | 19027174..19027307 | 336..469 | 100 | <- | Minus |
| 2R | 19028618..19028936 | 17..335 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:34 Download gff for
BO26960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14911090..14911188 | 1772..1869 | 97 | <- | Minus |
| arm_2R | 14911367..14911885 | 1253..1771 | 100 | <- | Minus |
| arm_2R | 14912150..14912494 | 908..1252 | 100 | <- | Minus |
| arm_2R | 14913383..14913520 | 770..907 | 100 | <- | Minus |
| arm_2R | 14913838..14914027 | 580..769 | 100 | <- | Minus |
| arm_2R | 14914113..14914222 | 470..579 | 100 | <- | Minus |
| arm_2R | 14914679..14914812 | 336..469 | 100 | <- | Minus |
| arm_2R | 14916123..14916441 | 17..335 | 100 | | Minus |
BO26960.pep Sequence
Translation from 16 to 1885
> BO26960.pep
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAG
VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF
FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK
RILFGRKAAARARSAKIASFLDH
BO26960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT1B-PE | 629 | CG15113-PE | 1..617 | 1..617 | 3147 | 100 | Plus |
| 5-HT1B-PA | 617 | CG15113-PA | 1..617 | 1..617 | 3147 | 100 | Plus |
| 5-HT1B-PD | 562 | CG15113-PD | 1..562 | 1..617 | 2794 | 90.8 | Plus |
| 5-HT1A-PB | 834 | CG16720-PB | 167..834 | 23..617 | 1334 | 46.5 | Plus |
| Oct-TyrR-PB | 601 | CG7485-PB | 103..598 | 81..603 | 609 | 31.1 | Plus |
