Clone BO26966 Report

Search the DGRC for BO26966

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:269
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG42449-RA
Protein status:BO26966.pep: Imported from assembly
Sequenced Size:964

Clone Sequence Records

BO26966.complete Sequence

964 bp assembled on 2010-07-02

GenBank Submission: KX797453

> BO26966.complete
GAAGTTATCAGTCGACATGGCCAGATATCAGAGTAGCCTTAGCCTCGGAA
TCCTTGTGGTCCTGCTAATCGATCAGCTGGCCAACGCCCAGTTCGTTCCG
GGCCCAATCTCTGGACCAATTCCCCGCCAGCAGAGATCGCTCTTTGGGTC
CGGTCCGCCGCCCGGTTGGAGTAGCGGTGGCCTCAGTCACGGCTGGAATA
GTCCCAGCTTTGAGTTTAGCCCGCTGCCGCCATCGCACAGTTCGCATGTG
ACCAAGGACGAGTTGCTGGCCCTGCTAGCCGCCTGGAAGGATGTGGCCAA
GCCGACGACTCCGGCACCGGAGCCAGAGCCCGAGGAGCCCGAACCCGAGC
CGGAGGCCACAACGCCAGCGCCGCCAGAGGATGTGGACGAACCGGAACCG
GAGCCCGAGGCACCGGCACCGGCACCGGCACCAGAGGCGCCAGCTGGTCC
ACCACCCGGCGTTCCCGTCACCGTCTCCCTGCCCGCCCTGGTGCCCATTC
AATTGGCGGCCATGTGGCAACAGCCGGCGCTGGGAGCAGCGGCCGGCGGA
CTGGGTCCTCTAAATCTGGGCGGCCTGGGTCTGGGCGGTGGCATTGCATT
GAACACGCTCGGCGGCGGTGCGGTAGCAGCCGGAGGAGCTATAGCGGCCG
GAGGCGGTGGAGCGGCGGCCGCCGGAGCAGCAGCAGCAGCGTCACGTTCC
GGAGTGGCACGCCCTCGAGCCCGGGCCAGGATCGGAGGACGTGCGTCCAA
TGCCCAGCAGCCCGCCATACGTTTCCCGGTGGCCAATCCGCGCAGCTTCA
CCTCGAACAACTATGTGGCGCCCAGGCCGCGTTATTATCGCGATACGGAG
CCCATGCGCGTCAACGTAATGGCACCACCGCCGCCGTCGCCCTACCAAAT
GGCCAATATCCAGGGTCCCGTTCAGCTGGTGCCCGCCTACTGGCAAGCAA
GCTTTCTAGACCAT

BO26966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42449-RA 933 CG42449-PA 1..930 17..946 4650 100 Plus
CG42449-RB 846 CG42449-PB 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42449-RA 1146 CG42449-RA 22..951 17..946 4650 100 Plus
CG42449-RB 1217 CG42449-RB 22..863 17..858 4210 100 Plus
CG42449-RB 1217 CG42449-RB 934..1022 858..946 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5683261..5684102 17..858 4210 100 Plus
X 23542271 X 5684173..5684261 858..946 445 100 Plus
Blast to na_te.dros performed 2014-11-28 02:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 639..753 692..582 132 62.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2860 617..694 120 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6849 621..694 109 60.8 Plus

BO26966.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:02:04 Download gff for BO26966.complete
Subject Subject Range Query Range Percent Splice Strand
CG42449-RA 22..951 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:34 Download gff for BO26966.complete
Subject Subject Range Query Range Percent Splice Strand
CG42449-RA 22..951 17..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:30 Download gff for BO26966.complete
Subject Subject Range Query Range Percent Splice Strand
CG42449-RA 22..951 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:30 Download gff for BO26966.complete
Subject Subject Range Query Range Percent Splice Strand
X 5683261..5684102 17..858 100 -> Plus
X 5684174..5684261 859..948 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:34 Download gff for BO26966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5577294..5578135 17..858 100 -> Plus
arm_X 5578207..5578294 859..948 97   Plus

BO26966.pep Sequence

Translation from 16 to 964

> BO26966.pep
MARYQSSLSLGILVVLLIDQLANAQFVPGPISGPIPRQQRSLFGSGPPPG
WSSGGLSHGWNSPSFEFSPLPPSHSSHVTKDELLALLAAWKDVAKPTTPA
PEPEPEEPEPEPEATTPAPPEDVDEPEPEPEAPAPAPAPEAPAGPPPGVP
VTVSLPALVPIQLAAMWQQPALGAAAGGLGPLNLGGLGLGGGIALNTLGG
GAVAAGGAIAAGGGGAAAAGAAAAASRSGVARPRARARIGGRASNAQQPA
IRFPVANPRSFTSNNYVAPRPRYYRDTEPMRVNVMAPPPPSPYQMANIQG
PVQLVPAYWQASFLDH

BO26966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42449-PA 310 CG42449-PA 1..310 1..310 1637 100 Plus
CG42449-PB 281 CG42449-PB 1..281 1..281 1475 100 Plus
CG13358-PD 301 CG13358-PB 10..191 10..197 230 34.8 Plus