BO26980.complete Sequence
1048 bp assembled on 2010-07-02
GenBank Submission: KX794757
> BO26980.complete
GAAGTTATCAGTCGACATGATTTCGGTAGCTCTGATTATCTTGTGCTTTT
TTCCGTTCGTGCAAAATGAGTACTTTCGTCCTTCGTACCAAGTCCTTGTG
CGCAAAAGGAATACTCAAGGAGATTTGATCGACGGCCATTGCTATGGCAA
TATCATTCAGAGTCGCTTGGTTTTAACATCAGCATCGTGTTTATTGAGTG
ATAACGATTTCGTAAATGGTAGGGAATTGTTAAATGCTGATGAGTTGGCG
GTATCATTCAAAGGCGAAGATTTGAACGAGTTGATATACCTCGTTGGTGG
CATAGACGTATATCCGCAGTTCAATTTCTCATCGTTGGACAATGATATAG
CGATCCTAAGTCTCAGTACGCAACTTCCGCTTTCCGAGCGAAACGATATT
GAATGGGTTTTAGTCGCTGACTATGATATTACCGATTTTCCATTGGAGGA
GGGTGTGGAATCTTACGTTTGGAAAAATGCGGATGGAGAAAACATATATC
CCGGTTATGGTGTTATTCATGAAAGTAATTTAGTTGGAATCATTTCCTAT
GGCTTGCCATTGAAAAATAAACGGGAATCTAATCTTGAAGTTCGGCGCCC
AAATAGGTTTACGCAATTAAATCCATATTTAAGTTGGATATATACAATAA
TACAGAATACAGAGATTGCGGACATTCAAAATAACAACTACAGTGTATCT
CTACCTTATCGTCAAAGAAAAATCGCAGAAATAGTGGAGGAATTCGTTGA
GCCTGATGCGGTGTATTTTCCAGACCCAGCAAACCCCATTAAAGATGAGA
TTGAAACTGAGGTAGAAGATTTGACGGACTCAGAAACTGATGCTGTAAAC
GTGGAAAGCGTCTCAGAAGATTTTTTAAACACGGAGGACCCTTTTAATGA
AAACATTGAAAGTGAGAAGGAATTCCTAAAAAACCGAGCAAACACATCTA
AGGCCAAAGGAGTTTGTGCATGGATATTCACATTTAATTTTCTTCTAGCG
ATAACTCGCACAATAAATTTCCATTTTTTTGCAAGCTTTCTAGACCAT
BO26980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1017 | CG34043-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1227 | CG34043-RB | 43..1056 | 17..1030 | 5070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10280379..10280830 | 468..17 | 2260 | 100 | Minus |
| 2L | 23513712 | 2L | 10280053..10280320 | 734..467 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 10279122..10279258 | 1030..894 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 10279629..10279688 | 792..733 | 285 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279356..10279414 | 897..839 | 280 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279520..10279570 | 839..789 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:06:33 has no hits.
BO26980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:30 Download gff for
BO26980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 17..1030 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:58 Download gff for
BO26980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1056 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:55 Download gff for
BO26980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1056 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:55 Download gff for
BO26980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10280053..10280320 | 467..734 | 100 | <- | Minus |
| 2L | 10279120..10279258 | 894..1032 | 98 | <- | Minus |
| 2L | 10279360..10279413 | 840..893 | 100 | <- | Minus |
| 2L | 10279520..10279570 | 789..839 | 100 | <- | Minus |
| 2L | 10279633..10279686 | 735..788 | 100 | <- | Minus |
| 2L | 10280381..10280830 | 17..466 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:58 Download gff for
BO26980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10279120..10279258 | 894..1032 | 98 | <- | Minus |
| arm_2L | 10279360..10279413 | 840..893 | 100 | <- | Minus |
| arm_2L | 10279520..10279570 | 789..839 | 100 | <- | Minus |
| arm_2L | 10279633..10279686 | 735..788 | 100 | <- | Minus |
| arm_2L | 10280053..10280320 | 467..734 | 100 | <- | Minus |
| arm_2L | 10280381..10280830 | 17..466 | 100 | | Minus |
BO26980.pep Sequence
Translation from 16 to 1048
> BO26980.pep
MISVALIILCFFPFVQNEYFRPSYQVLVRKRNTQGDLIDGHCYGNIIQSR
LVLTSASCLLSDNDFVNGRELLNADELAVSFKGEDLNELIYLVGGIDVYP
QFNFSSLDNDIAILSLSTQLPLSERNDIEWVLVADYDITDFPLEEGVESY
VWKNADGENIYPGYGVIHESNLVGIISYGLPLKNKRESNLEVRRPNRFTQ
LNPYLSWIYTIIQNTEIADIQNNNYSVSLPYRQRKIAEIVEEFVEPDAVY
FPDPANPIKDEIETEVEDLTDSETDAVNVESVSEDFLNTEDPFNENIESE
KEFLKNRANTSKAKGVCAWIFTFNFLLAITRTINFHFFASFLDH
BO26980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-PB | 338 | CG34043-PB | 1..338 | 1..338 | 1760 | 100 | Plus |
