BO26990.complete Sequence
934 bp assembled on 2010-07-02
GenBank Submission: KX796951
> BO26990.complete
GAAGTTATCAGTCGACATGATACGTTTGGGGAACCAAATGTGCCGGCAAG
TGGCCTTTAATATACAGACTGTATTCCGAAACCCGGGCACCGCGAACAAT
CCGAGATTAATCACCAGAAAGATGACACAACAGCGACCGCCGGTGAATTG
GACAACCAGTATTCCCAATCAGGCGGCGAAGGACAAGGAGAAGATAGCTC
CTTTGGGATGGTTCCTCCTGCTCATACCGGCCACCACTTTTGGCTTGGGC
TGCTGGCAAGTGAAGCGCAAGATTTGGAAGGAGCAGTTGATCAAGGATCT
CAACAAGCAGCTGAGCACGGCGCCTGTGGCTCTACCAGACGATCTCACTG
ACTTGGCCCAAATGGAGTACCGCCTGGTCAAGATCCGTGGACGTTTCCTT
CACGACAAGGAGATGCGCCTGGGTCCGAGATCGCTGATACGGCCCGATGG
CGTGGAAACCCAAGGAGGACTCTTCTCGCAGCGCGACTCGGGCAATGGCT
ATCTAATAGTAACCCCTTTTCAGCTGGCAGATAGAGACGACATAGTGCTC
GTCAATCGGGGCTGGGTGTCCCGCAAGCAAGTGGAGCCGGAAACCAGGCC
GCTGGGCCAACAACAGGCGGAAGTGGAGCTCACCGCCGTCGTGCGCAAAG
GAGAGGCGCGTCCGCAGTTCACACCCGACCACAAGGGCAATGTCTATCTC
TATCGCGACTTGGCGCGCATGTGCGCCGCCACAGGAGCAGCTCCTGTGTT
CCTGGACGCCGTCTACGATCCGCAAACGGCTGCACATGCTCCAATCGGTG
GACAGACACGCGTTACCCTGCGCAACGATCATCTGTCGTACCTGGTGACC
TGGTTCAGTCTATCGGCGGCCACCTCCTTTTTGTGGTACCGCCAAATAGT
CAAGAGGATACCCTTCGCAAGCTTTCTAGACCAT
BO26990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf1-RA | 903 | CG9943-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf1-RA | 1055 | CG9943-RA | 88..987 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6959140..6959518 | 538..916 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 6958433..6958636 | 17..220 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 6958889..6959083 | 343..537 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 6958704..6958826 | 220..342 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:11 has no hits.
BO26990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:21 Download gff for
BO26990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 88..987 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:49 Download gff for
BO26990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 88..987 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:47 Download gff for
BO26990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 88..987 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:47 Download gff for
BO26990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6958433..6958636 | 17..220 | 100 | -> | Plus |
| 3L | 6958705..6958826 | 221..342 | 100 | -> | Plus |
| 3L | 6958889..6959083 | 343..537 | 100 | -> | Plus |
| 3L | 6959140..6959518 | 538..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:49 Download gff for
BO26990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6951533..6951736 | 17..220 | 100 | -> | Plus |
| arm_3L | 6951805..6951926 | 221..342 | 100 | -> | Plus |
| arm_3L | 6951989..6952183 | 343..537 | 100 | -> | Plus |
| arm_3L | 6952240..6952618 | 538..918 | 99 | | Plus |
BO26990.pep Sequence
Translation from 16 to 934
> BO26990.pep
MIRLGNQMCRQVAFNIQTVFRNPGTANNPRLITRKMTQQRPPVNWTTSIP
NQAAKDKEKIAPLGWFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLS
TAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVETQG
GLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQ
AEVELTAVVRKGEARPQFTPDHKGNVYLYRDLARMCAATGAAPVFLDAVY
DPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSLSAATSFLWYRQIVKRIPF
ASFLDH
BO26990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf1-PA | 300 | CG9943-PA | 1..300 | 1..300 | 1578 | 100 | Plus |
