BO26993.complete Sequence
688 bp assembled on 2010-07-02
GenBank Submission: KX797774
> BO26993.complete
GAAGTTATCAGTCGACATGGGTAAGGGTAACAATATGATTCCGAATCAGC
ACTACCACAAGTGGTGGCAGCGGCATGTGAAGACCTGGTTCAACCAGCCG
GCCCGCAAGGTCCGCAGGCATGCGAACCGCGTCAAGAAGGCTAAGGCCGT
CTTCCCCCGCCCAGCCAGCGGTGCCCTGCGCCCTGTGGTTCGCTGCCCCA
CCATCCGCTACCACACCAAGCTGCGTGCCGGCCGTGGTTTCACCCTGGAG
GAGCTGAAGGGTGCCGGCATTGGCGCCAACTTCGCCAAGACCATCGGCAT
TGCCGTCGACAGGAGGCGCAAGAACAAATCCCTGGAGTCCCGCCAGCGTA
ACATCCAGCGCCTCAAGGAGTACCGCAGCAAGTTGATCCTGTTCCCCATC
AACGAGAAGAAGATCCGCGCCGGCGAGTCCTCTCTGGAGGAGTGCAAGCT
GGCTACCCAGCTTAAGGGACCCGTCCTGCCCATCAAAAATGAGCAGCCCG
CCGTGGTCGAGTTCCGTGAGGTGACCAAGGATGAGAAGAAGTTCAAGGCC
TTCGCCACGCTGCGCAAGGCTCGCACTGATGCCCGTTTGGTCGGAATCCG
CGCCAAGCGCGCCAAGGAGGCCGCTGAGAGCGAGGACGCCGCCAAGGGAG
ACCCCAAGAAGGCCAAGAAGGCAAGCTTTCTAGACCAT
BO26993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13-RC | 657 | CG4651-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
RpL13-RB | 657 | CG4651-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
RpL13-RA | 657 | CG4651-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13-RC | 1186 | CG4651-RC | 306..959 | 17..670 | 3270 | 100 | Plus |
RpL13-RB | 774 | CG4651-RB | 48..701 | 17..670 | 3270 | 100 | Plus |
RpL13-RA | 791 | CG4651-RA | 65..718 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9967937..9968248 | 258..569 | 1560 | 100 | Plus |
2L | 23513712 | 2L | 9967635..9967878 | 17..260 | 1220 | 100 | Plus |
2L | 23513712 | 2L | 9968315..9968418 | 567..670 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:06 has no hits.
BO26993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:18 Download gff for
BO26993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13-RB | 48..701 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:47 Download gff for
BO26993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13-RA | 65..718 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:44 Download gff for
BO26993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13-RA | 65..718 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:44 Download gff for
BO26993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9967635..9967877 | 17..259 | 100 | -> | Plus |
2L | 9967939..9968247 | 260..568 | 100 | -> | Plus |
2L | 9968317..9968418 | 569..672 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:47 Download gff for
BO26993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9968317..9968418 | 569..672 | 98 | | Plus |
arm_2L | 9967635..9967877 | 17..259 | 100 | -> | Plus |
arm_2L | 9967939..9968247 | 260..568 | 100 | -> | Plus |
BO26993.pep Sequence
Translation from 16 to 688
> BO26993.pep
MGKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPA
SGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRR
RKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLK
GPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAK
EAAESEDAAKGDPKKAKKASFLDH
BO26993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13-PC | 218 | CG4651-PC | 1..218 | 1..218 | 1126 | 100 | Plus |
RpL13-PB | 218 | CG4651-PB | 1..218 | 1..218 | 1126 | 100 | Plus |
RpL13-PA | 218 | CG4651-PA | 1..218 | 1..218 | 1126 | 100 | Plus |