Clone BO26993 Report

Search the DGRC for BO26993

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:269
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRpL13-RA
Protein status:BO26993.pep: Imported from assembly
Sequenced Size:688

Clone Sequence Records

BO26993.complete Sequence

688 bp assembled on 2010-07-02

GenBank Submission: KX797774

> BO26993.complete
GAAGTTATCAGTCGACATGGGTAAGGGTAACAATATGATTCCGAATCAGC
ACTACCACAAGTGGTGGCAGCGGCATGTGAAGACCTGGTTCAACCAGCCG
GCCCGCAAGGTCCGCAGGCATGCGAACCGCGTCAAGAAGGCTAAGGCCGT
CTTCCCCCGCCCAGCCAGCGGTGCCCTGCGCCCTGTGGTTCGCTGCCCCA
CCATCCGCTACCACACCAAGCTGCGTGCCGGCCGTGGTTTCACCCTGGAG
GAGCTGAAGGGTGCCGGCATTGGCGCCAACTTCGCCAAGACCATCGGCAT
TGCCGTCGACAGGAGGCGCAAGAACAAATCCCTGGAGTCCCGCCAGCGTA
ACATCCAGCGCCTCAAGGAGTACCGCAGCAAGTTGATCCTGTTCCCCATC
AACGAGAAGAAGATCCGCGCCGGCGAGTCCTCTCTGGAGGAGTGCAAGCT
GGCTACCCAGCTTAAGGGACCCGTCCTGCCCATCAAAAATGAGCAGCCCG
CCGTGGTCGAGTTCCGTGAGGTGACCAAGGATGAGAAGAAGTTCAAGGCC
TTCGCCACGCTGCGCAAGGCTCGCACTGATGCCCGTTTGGTCGGAATCCG
CGCCAAGCGCGCCAAGGAGGCCGCTGAGAGCGAGGACGCCGCCAAGGGAG
ACCCCAAGAAGGCCAAGAAGGCAAGCTTTCTAGACCAT

BO26993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-RC 657 CG4651-PC 1..654 17..670 3270 100 Plus
RpL13-RB 657 CG4651-PB 1..654 17..670 3270 100 Plus
RpL13-RA 657 CG4651-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-RC 1186 CG4651-RC 306..959 17..670 3270 100 Plus
RpL13-RB 774 CG4651-RB 48..701 17..670 3270 100 Plus
RpL13-RA 791 CG4651-RA 65..718 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9967937..9968248 258..569 1560 100 Plus
2L 23513712 2L 9967635..9967878 17..260 1220 100 Plus
2L 23513712 2L 9968315..9968418 567..670 520 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:06:06 has no hits.

BO26993.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:18 Download gff for BO26993.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RB 48..701 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:47 Download gff for BO26993.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RA 65..718 17..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:44 Download gff for BO26993.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RA 65..718 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:44 Download gff for BO26993.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9967635..9967877 17..259 100 -> Plus
2L 9967939..9968247 260..568 100 -> Plus
2L 9968317..9968418 569..672 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:47 Download gff for BO26993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9968317..9968418 569..672 98   Plus
arm_2L 9967635..9967877 17..259 100 -> Plus
arm_2L 9967939..9968247 260..568 100 -> Plus

BO26993.pep Sequence

Translation from 16 to 688

> BO26993.pep
MGKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPA
SGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRR
RKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLK
GPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAK
EAAESEDAAKGDPKKAKKASFLDH

BO26993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-PC 218 CG4651-PC 1..218 1..218 1126 100 Plus
RpL13-PB 218 CG4651-PB 1..218 1..218 1126 100 Plus
RpL13-PA 218 CG4651-PA 1..218 1..218 1126 100 Plus