Clone BO27018 Report

Search the DGRC for BO27018

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:270
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG13891-RA
Protein status:BO27018.pep: Imported from assembly
Sequenced Size:508

Clone Sequence Records

BO27018.complete Sequence

508 bp assembled on 2010-07-02

GenBank Submission: KX793906

> BO27018.complete
GAAGTTATCAGTCGACATGGCGGCTCTGGTGGACGAAAGCAACTACGCCT
ATGTGAAGCAGGTGGCTCTGGACTGGCGGGAGCTGGTGCGCGAGAAGCGC
AAGAGCAATATCTTTTCGCCCACGATAAGCATGCAGGCGGTTGATTCCCA
ACAGCCGATAGGGGACACAAGGTCGCGGACACAGTCGATGATTCCGGCCG
AGAGACGCGAGTCCAGCTTCTACCGGCACCGCTTCTCGCAGCAGGCCAAG
CCCGTGGAGATCGAGTGCCAGGAGGTCGGATCAATGGAGCCAGACCGCAT
TCGGGTTAGCGGAGACATTCTGCTCTACATCTACCAACCGATTTTTGTGT
CAAACACAGTGATGGCCTCCATTCAAGCCTGGTCGCCCAGTGAAATAAGC
ATAACGTCGTCCAAACTGAAGGAGCCTATTAGAGAAGAGAACCCCACGGC
TAAGGTGGAATCCGATCCATCACCCGAGCCCATGTCGCCGGCAAGCTTTC
TAGACCAT

BO27018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-RA 477 CG13891-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-RA 761 CG13891-RA 196..674 12..490 2380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 433233..433711 490..12 2380 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 02:07:31 has no hits.

BO27018.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:56 Download gff for BO27018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 186..659 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:22 Download gff for BO27018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 201..674 17..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:18 Download gff for BO27018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 201..674 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:18 Download gff for BO27018.complete
Subject Subject Range Query Range Percent Splice Strand
3L 433231..433706 17..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:22 Download gff for BO27018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 433231..433706 17..492 99   Minus

BO27018.pep Sequence

Translation from 16 to 508

> BO27018.pep
MAALVDESNYAYVKQVALDWRELVREKRKSNIFSPTISMQAVDSQQPIGD
TRSRTQSMIPAERRESSFYRHRFSQQAKPVEIECQEVGSMEPDRIRVSGD
ILLYIYQPIFVSNTVMASIQAWSPSEISITSSKLKEPIREENPTAKVESD
PSPEPMSPASFLDH

BO27018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-PA 158 CG13891-PA 1..158 1..158 801 100 Plus