BO27029.complete Sequence
1150 bp assembled on 2010-07-02
GenBank Submission: KX800052
> BO27029.complete
GAAGTTATCAGTCGACATGCCAAAGCCCTCTAAACAGGACTCTATCTCGT
TAAAATCCAGTAACTCAGTTTTTTTGGAAGATGACCAATTCGAAAATCTA
GAGGAAGAGTTTCTGCATAATGAATGCATTAGTTTACCCTCCGACTTAAC
GAGAGTACAAAGTGTTATTTTGGACTACAAGCAGTTCAAAGCGGCTCGCA
CAATTCAGCGTTATATTCACGGATGGCTAGTTCGAGAAAATTTCCGAAAA
CTTCAGAAGTCTGCGATTATTATTCAAAAATGGTGGCGCCGTTTTGAGGC
TCAGAAAAATTTGCTTTATGTGGCCGAAAGCGCTTTGCAGTCGGCTGTTT
TGGCCCATTACGACAAGTCTGCTACCCTGATTCAGACGCTCTATCGCGGA
TGGTGGTCGCGAAAACATATCTTTGACCTAACCATGCTCAAGAGCGTGCA
GATAATGTTGGCAAAGGACCTGATTCACTCTTTGGTCAATTACTTGCACG
CAACGAAAAATTCTGAAATGCTTCCAGGCATTTACACGATACGGGACTCG
AGCATATGTCTGGAAACATTGGAGGAACTGATGGCAACATTTGGCTTTCG
ATTCTATAACGCTAATGCTTGCTACAAAATGAAGGAAACGTTGTCAATGG
TGGCACAGAGCCGAAAGACGTTTACGGCCACATCCTATTTCACGGATGTA
CCATATCCCGGGTTTAATGATCGAGGATTTTGTGGCCCTCGGCAGAATTC
TGCCATGACCTTGAATGCCAAAGATCCAGAACATTATGAATTGATTCACA
TATTCCTGTCCGGTAGTAGAAAAATTGGCATGACAACGGCTAAGCTCGAA
CAGAAAATAGCCAACATTGCAGAAGAAAATCGCTTAAATATGTTTATAAA
GAGGGACAACAAGAAAAAGAGTTTTATTAAAAGGATTTATCTTGACATGA
AGAACTGGCATTACTCAAATGGAGATCCAATTCTTCCCATCAGCTTGTTT
AAAAATAGTGAGATGCCTGCGGTCCTGGAAAGTGCCAAGAAAACTCTGGA
ATCAATTTTTGGTGAACTGGAGCCGTGTGTTTGTCCAACGAACAAAGAAA
TATCTTTCCTTTTAAATTCTCTTAATGATTCTGCAAGCTTTCTAGACCAT
BO27029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1119 | CG18063-PE | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| CG18063-RC | 1119 | CG18063-PC | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| CG18063-RD | 1116 | CG18063-PD | 1..1113 | 17..1132 | 5500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1276 | CG18063-RE | 84..1199 | 17..1132 | 5580 | 100 | Plus |
| CG18063-RC | 1283 | CG18063-RC | 84..1199 | 17..1132 | 5580 | 100 | Plus |
| CG18063-RD | 1280 | CG18063-RD | 84..1196 | 17..1132 | 5500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15958184..15958584 | 152..552 | 2005 | 100 | Plus |
| 2L | 23513712 | 2L | 15958697..15959028 | 551..882 | 1660 | 100 | Plus |
| 2L | 23513712 | 2L | 15959097..15959347 | 882..1132 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 15958031..15958132 | 52..153 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:07:14 has no hits.
BO27029.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:50 Download gff for
BO27029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1199 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:14 Download gff for
BO27029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1199 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:10 Download gff for
BO27029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1199 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:10 Download gff for
BO27029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15957941..15957975 | 17..51 | 100 | -> | Plus |
| 2L | 15958031..15958132 | 52..153 | 100 | -> | Plus |
| 2L | 15958186..15958584 | 154..552 | 100 | -> | Plus |
| 2L | 15958699..15959027 | 553..881 | 100 | -> | Plus |
| 2L | 15959097..15959347 | 882..1134 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:14 Download gff for
BO27029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15957941..15957975 | 17..51 | 100 | -> | Plus |
| arm_2L | 15958031..15958132 | 52..153 | 100 | -> | Plus |
| arm_2L | 15958186..15958584 | 154..552 | 100 | -> | Plus |
| arm_2L | 15958699..15959027 | 553..881 | 100 | -> | Plus |
| arm_2L | 15959097..15959347 | 882..1134 | 99 | | Plus |
BO27029.pep Sequence
Translation from 16 to 1150
> BO27029.pep
MPKPSKQDSISLKSSNSVFLEDDQFENLEEEFLHNECISLPSDLTRVQSV
ILDYKQFKAARTIQRYIHGWLVRENFRKLQKSAIIIQKWWRRFEAQKNLL
YVAESALQSAVLAHYDKSATLIQTLYRGWWSRKHIFDLTMLKSVQIMLAK
DLIHSLVNYLHATKNSEMLPGIYTIRDSSICLETLEELMATFGFRFYNAN
ACYKMKETLSMVAQSRKTFTATSYFTDVPYPGFNDRGFCGPRQNSAMTLN
AKDPEHYELIHIFLSGSRKIGMTTAKLEQKIANIAEENRLNMFIKRDNKK
KSFIKRIYLDMKNWHYSNGDPILPISLFKNSEMPAVLESAKKTLESIFGE
LEPCVCPTNKEISFLLNSLNDSASFLDH
BO27029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-PE | 372 | CG18063-PE | 1..372 | 1..372 | 1934 | 100 | Plus |
| CG18063-PC | 372 | CG18063-PC | 1..372 | 1..372 | 1934 | 100 | Plus |
| CG18063-PD | 371 | CG18063-PD | 1..371 | 1..372 | 1918 | 99.7 | Plus |
| CG13544-PA | 367 | CG13544-PA | 45..354 | 44..356 | 398 | 30.6 | Plus |
| CG12448-PC | 352 | CG12448-PC | 52..309 | 45..307 | 374 | 31.2 | Plus |
