BO27092.complete Sequence
1576 bp assembled on 2010-07-02
GenBank Submission: KX794321
> BO27092.complete
GAAGTTATCAGTCGACATGAGTTCGGCTCGCTTCGCGCGCTCAGGGCGCG
TCCGTATCTGCATCCTGATGAGCATGTTCATCGTGCTCATCATGATGATT
GTTATCTACCAAATGTCCCAACACCAATTGGACGAGAGCCGCGCCTTCCA
AGAGGGCCTCAGTGTCCAGATGCAATCCCTGAATGCCGAAAAACTTACCG
CCGAGAAGAGAATGAGCGCGCTGCGCTCGGAAAAGATGACCCTGCAGGAG
CAGTACGAGGGTCAGTTGGCGGAGGCACTGCAGAAGCAGCACGACACGGA
ACACGCACTGCAGGAGAAGTTCGACGCTCAGGTGGAAAAGTACAAGCTGC
TGGAGATTAAGTACACCAACCTGGAGGCCGAGTTCGTCAAGAGCAAGAAG
AAACACATCGAGGACACGAACGCTTTCGACCAAAAGCTGCAAAAGGTCCT
GGCGGATCTTCATAAGGACAAGGCCAGCAAGGAGCGCGAGGTGGCTGCCT
GGAAGGAAAAGCTGGACAAGCTACAGCGCGATGGTGAGCACAAGATTCAC
GCCCTGGAAGCCACAATTGCGGAATTCAAGACCAACTGCAACTATGTACC
TAAAGTCCAGCCCGCCGAGGCACCGGTCCAGGGACACCAGCAGCAACTGA
ATAAGCCCGCCGAGCAGATGCCCACCACGCACCACTCAAATCCTGCCCAG
CTAGCGCACAGCATTGAAAAGCCCCGCAACGAGAAGTCCTTCGATGCCCA
AGTGCAAATTGTGCCCAAATCGGTCAGTGAGAAGCAACAGCAGGAGGAGC
CGCAACTATCCGGCGGTCCTGTTTCCCCGTTAAGTGCACCCCGCAAGAGC
AGCACCCAAGCCTCAGTGGGCAGCGCTTCGGACAAGAAAGCCGGTGATGC
CCCCAACGCATCTGTAGCCCCAAAAGTTAGTAGCAGCGGCCTTCCCCCGC
TTGCAGTGCCACCAGCGAAGACTGAGCGCAAACTTCCCGAAAACGTGGCT
CCCATTCCCGAGAACTTTGAAGACAAAGCGGATACTAAGGGCGACGCTGT
CGATGTAGACAACGCCGCCGAAGACCTGCCGAAGAACGAGAACAACAATC
GTTACGCCAACGCAGTAAATGATATGGAGGGCAACAAAAATGTAGGCGTA
GCTCCCAAACCCATCGAGGATTCGGGCGCTCACGAAGTTAAGGATGCGTT
AAACGAGCCTAGCTTTAATTTGCCCGCCGCTGGTGGCGGCCAGAATTTCT
TCGATGGCGAATTGCCGGCACCTGGTCCCGGACCCGTTCCCGATGAAACG
GCCAAACAGATGGCCGAGGCAGCCGGTGCCGGAGGAGGTGGCGACGGAGA
TGACGACGACGATGTGGGTGATGTGGCCGTGAAACAGCCACAGCATTTGC
TCGATACAGACAATCTAAACAACGAAATCGTTGCTGACCAGGGTAAGGAG
TTCGCCGAAGGCATCCACCTGGAAGACGGCATGGATGAAGATCAAGATGA
GGACGACTATTCCAATGGTGGTGCAGCACGCAAGAAGGGAGGCGAGGTTA
TTAGACACGCAAGCTTTCTAGACCAT
BO27092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12213-RD | 1545 | CG12213-PD | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| CG12213-RB | 1545 | CG12213-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| CG12213-RE | 1578 | CG12213-PE | 775..1575 | 758..1558 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12213-RD | 2640 | CG12213-RD | 345..1886 | 17..1558 | 7710 | 100 | Plus |
| CG12213-RB | 1714 | CG12213-RB | 111..1652 | 17..1558 | 7710 | 100 | Plus |
| CG12213-RE | 2439 | CG12213-RE | 885..1685 | 758..1558 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11965545..11966286 | 1499..758 | 3710 | 100 | Minus |
| 3R | 32079331 | 3R | 11966796..11967125 | 506..177 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 11966488..11966741 | 757..504 | 1270 | 100 | Minus |
| 3R | 32079331 | 3R | 11967188..11967347 | 176..17 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 11965428..11965487 | 1558..1499 | 300 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 223..267 | 1322..1366 | 117 | 73.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11401..11445 | 1322..1366 | 117 | 73.3 | Plus |
| G4 | 3856 | G4 G4_DM 3856bp | 2192..2246 | 1362..1416 | 113 | 67.3 | Plus |
BO27092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 10:01:43 Download gff for
BO27092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 168..1709 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:09 Download gff for
BO27092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 111..1652 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:05 Download gff for
BO27092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 111..1652 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:05 Download gff for
BO27092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11965426..11965486 | 1500..1560 | 96 | <- | Minus |
| 3R | 11965545..11966286 | 758..1499 | 100 | <- | Minus |
| 3R | 11966488..11966739 | 506..757 | 100 | <- | Minus |
| 3R | 11966797..11967125 | 177..505 | 100 | <- | Minus |
| 3R | 11967188..11967347 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:09 Download gff for
BO27092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7791148..7791208 | 1500..1560 | 96 | <- | Minus |
| arm_3R | 7791267..7792008 | 758..1499 | 100 | <- | Minus |
| arm_3R | 7792210..7792461 | 506..757 | 100 | <- | Minus |
| arm_3R | 7792519..7792847 | 177..505 | 100 | <- | Minus |
| arm_3R | 7792910..7793069 | 17..176 | 100 | | Minus |
BO27092.pep Sequence
Translation from 16 to 1576
> BO27092.pep
MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV
QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE
KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK
DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA
EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP
KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV
APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA
AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF
NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV
GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN
GGAARKKGGEVIRHASFLDH
BO27092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12213-PD | 514 | CG12213-PD | 1..514 | 1..514 | 2647 | 100 | Plus |
| CG12213-PB | 514 | CG12213-PB | 1..514 | 1..514 | 2647 | 100 | Plus |
| CG12213-PE | 525 | CG12213-PE | 1..525 | 1..514 | 2625 | 97.9 | Plus |
| CG12213-PC | 581 | CG12213-PC | 1..581 | 1..514 | 1926 | 70.5 | Plus |
