BO27102.complete Sequence
1090 bp assembled on 2010-09-17
GenBank Submission: KX799455
> BO27102.complete
GAAGTTATCAGTCGACATGTCCAGTATTTGGACAAAAAGGAAGGACTCTT
TCTGCAATAACGAAAATATAAGGGCTCAGAAGTTCGAGGATGTGATTGTA
ATCGATGACAATGATCGTGGCGACTCTCTCCGGAGTGTAAAATCCGAGCC
CCCTGAAGAAAAGCCCCGCTTATCTCCACAGGACGCTAATCAAAAACGTG
CAGTAAAGGAGGAGAAGGAAATGTCCAGGCGCGCACGCGCTCGAGCCAAG
AAAATACGGAATACAGAGGCAAGAGCAGCGAAATCGGTGGTTACCAGGGG
TGCGGGTAAAAAAGCAAGGAAGCGTAAGAAGCAAAATAAAGCGGCACTCA
AGAAGGCTAGTGAACTTGAACCCAAAAAGGCAAAGGGCTCCAAGGAGGCT
AGTGCCCACAAGAAGGCAAAGGGACCCAAGAATACAAGTCCTCCTATGGC
TGCGAAGCCCAATTTGGCAAAGAGTGACAACCTGACGATGGCCCTGGTGG
ACGAGCTCCACGAAGACGGCCGTCTGCTTAACGAAAGGTGGCAGGAGGTC
GAGGCCCAGCTGGCGTACATGGTGACTGACAGAGTCATGGCCATGCCGGG
GGGTCCCGTCCCGTCCTTCGATAGCTCAGACGTAGTTCGTGGCCACCGAG
TGATCCGGTGCGAAGACGGATTTTCAAAGGTATTCCTGTCGGACTGTGTT
GCCGCGATTAGCAACTCGTGGCATGACATGCGCATCAAGCTCGTCCATGT
CAGCGATGTACCATTTGCGCCTCAGGCGCGCATCTGGTTGCCCACGGGTC
AAACGGACCACAACCGGATCATGATCTGCTTGAGAGCCCAGAACCTAAAT
GTGGACATGTCGGACTGGTCCATCCTCAGGGCGGAGGAAGTCATGGAGAT
CAGTCAGAGTTTCCTGCTCCTTATCAACCGGAGGTGCATCCCGCAACTGG
ATGCAGTGGACTACAAGTTGCGCTATGGCATACGAATGGCCCAGATCCAG
CTCATTTTAAGCGAAGCAGACGATTTGCCATCGGAGTTCGACAACTACCA
CCCATTTTGCCATTTTCCCCATGCAAGCTTTCTAGACCAT
BO27102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7824-RA | 1059 | CG7824-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| CG7824-RC | 903 | CG7824-PC | 9..900 | 181..1072 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7824-RA | 1229 | CG7824-RA | 66..1121 | 17..1072 | 5280 | 100 | Plus |
| CG7824-RC | 1161 | CG7824-RC | 162..1053 | 181..1072 | 4460 | 100 | Plus |
| CG7824-RC | 1161 | CG7824-RC | 66..162 | 17..113 | 485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29857760..29858719 | 1072..113 | 4800 | 100 | Minus |
| 3R | 32079331 | 3R | 29858775..29858871 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:41:06 has no hits.
BO27102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:26:26 Download gff for
BO27102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 49..1104 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:21 Download gff for
BO27102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 66..1121 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:14 Download gff for
BO27102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 66..1121 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:14 Download gff for
BO27102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29857758..29858718 | 114..1074 | 99 | <- | Minus |
| 3R | 29858775..29858871 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:21 Download gff for
BO27102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25683480..25684440 | 114..1074 | 99 | <- | Minus |
| arm_3R | 25684497..25684593 | 17..113 | 100 | | Minus |
BO27102.pep Sequence
Translation from 16 to 1090
> BO27102.pep
MSSIWTKRKDSFCNNENIRAQKFEDVIVIDDNDRGDSLRSVKSEPPEEKP
RLSPQDANQKRAVKEEKEMSRRARARAKKIRNTEARAAKSVVTRGAGKKA
RKRKKQNKAALKKASELEPKKAKGSKEASAHKKAKGPKNTSPPMAAKPNL
AKSDNLTMALVDELHEDGRLLNERWQEVEAQLAYMVTDRVMAMPGGPVPS
FDSSDVVRGHRVIRCEDGFSKVFLSDCVAAISNSWHDMRIKLVHVSDVPF
APQARIWLPTGQTDHNRIMICLRAQNLNVDMSDWSILRAEEVMEISQSFL
LLINRRCIPQLDAVDYKLRYGIRMAQIQLILSEADDLPSEFDNYHPFCHF
PHASFLDH
BO27102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7824-PA | 352 | CG7824-PA | 1..352 | 1..352 | 1824 | 100 | Plus |
| CG7824-PC | 300 | CG7824-PC | 4..300 | 56..352 | 1535 | 100 | Plus |
