BO27103.complete Sequence
1921 bp assembled on 2010-10-15
GenBank Submission: KX798406
> BO27103.complete
GAAGTTATCAGTCGACATGGATGATGATGCAGAATACCAGAAGCTCCGGC
GAAACATGCAGGGAGCTCAAGGATCGAGAGAAGGACATCCAGGATCAAAT
GATGGCATCAGCACAGTAATCTACAGCGCGGAAGGAGAAGAGCTTACCAT
AAATTGTGAGGCCGAATCCGAGTCATCCGGCCAGCGAGATCAGTGGAGCA
GGGGAGTGGAGTTCCTCTTCTCCTGCATCGCCCTATCCGTTGGCCTTGGC
AATGTCTGGCGATTTCCGTTCATTGCTCTGGAGAATGGCGGTGGCGCCTT
TCTCATACCCTACGTGATTGTGCTCCTGCTGATTGGCAGACCGGTTTACT
ATCTGGAGGTCATCATTGGTCAGTTCTCGAGCCGTGGTTGCATCAGAGCC
TTCGATATGGCACCTATAATGAGGGGTATTGCCTATGGTCAGGTGTATTC
CACCGCCTTGGCCACCACCTACTACGCCTGCATTATGGCCTTGACCATCA
GATATTTGGTGGCTAGTTTCAGTGAAGTCCTGCCCTGGACATATTGCCTC
GTGGAATGGGGCAAAAGTTGCGTGGCGACGGGAGCCACAGCTGCCAATGA
CTCATCCATTGTGCAGGGGGTTTCCTCCGCCGAGCTGTTTTTCACGCAAA
CAGTTCTGAGGGAGCCCGAATCGCTGGACGATAATGGCCTGGGTACTCCC
AGTTGGGATCTGGTCTTGTGTCTCCTGGCCACTTGGGTGATCATCGGCAC
GATTTTGTCAAAGGGCATTCGCAGTTCTGGGAAAGCTTCCTATTTCCTGG
CCCTGTTTCCCTATGTGATCATGATCGTACTGCTCATTCGGGCGGTCACT
TTACCAGGTGCCTGGCAGGGAATTGTGTACTTCCTGAAGCCCCAATGGTC
CCAGCTGCTCAATCCGCACGTGTGGTACGCGGCCATCACACAGATGTTCT
TCTCGCTGGCCATCTGCTTCGGAACGCTGGTCATGTACGCCTCCTTCAAT
GATTTCAACAAGAATGTGCACAAAGATGTGATAATAATCACCACTATAGA
CTCGCTTACATCCATTCTGGCTGGTTGCATCATCTTTGGAATTCTGGGCA
ACCTGGCCTTTGAGACCAACACCAAGGATATTTCGCAGGTTGTCAAAGGT
GGAGCTGGTCTAGCGTTCATTTCCTATCCAGAGGCCATTGCCAAATTCAA
GTACCTTCCCCAACTGTTCGCCGTTCTGTTCTTCTTCATGCTCCTGGTCC
TGGGCATTGGATCGAATATTGGAATGGCTTCGGCTGTGGTGAATGTGGTT
AAGGATCGATTCACCCATTTGCCCCACTGGCTGCTGGCCGTGAGTGCTTC
GATAATTGGATTCCTCTGTGGCCTGGTGTACATGACTCCGGGCGGACAGT
TCGTACTGAATCTCGTCGACTTTTATGGCTGCACTTTTATAGCCCTGGTC
TTGGCCATTGCAGAATTGTTGGCAGTGGGCTGGATTTATGGTGTGAAGCG
CATCTGCAGCGACATTGAGTTCATGCTGAATGTGAAGACCAGCTTCTATT
GGCGCATCTGCTGGGCCATTGTGGCACCTGGTCTGATGTTCCTGGTCCTC
GTCTATATGCTCTTCAGCTACGAACCTCTGACGTACCGAGGTGTTCAGTA
TCCGCCGGTCTACTATATGGCTGGATGGATTATCTGGGGACTGGGTGTGC
TGCAGTTGCCCTTCTGGGCTTTGGTGACGATTTACCAGCAGCCAGGAAAG
ACTTTTGGCAGTAAATTCGGACTGGCCATGCAACCCACTGCCAATTGGGG
TCCATTGCAGACGCAGAAGTTCGAGGCCTACATAATCCATCGAAAACGCG
AGGCGGACTTTAAGAGCCCACGTGGCGGATACTTGTTCGACAATATCTTT
GGCGCAAGCTTTCTAGACCAT
BO27103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8850-RB | 1890 | CG8850-PB | 1..1887 | 17..1903 | 9435 | 100 | Plus |
CG8850-RA | 1851 | CG8850-PA | 1..1848 | 56..1903 | 9240 | 100 | Plus |
CG1698-RB | 1965 | CG1698-PB | 817..1301 | 773..1257 | 400 | 72.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8850-RB | 2260 | CG8850-RB | 186..2072 | 17..1903 | 9435 | 100 | Plus |
CG8850-RA | 2086 | CG8850-RA | 73..1945 | 31..1903 | 9365 | 100 | Plus |
CG42700-RJ | 4712 | CG42700-RJ | 3055..3793 | 1762..1024 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12299138..12299876 | 1762..1024 | 3695 | 100 | Minus |
2R | 25286936 | 2R | 12299933..12300310 | 1023..646 | 1890 | 100 | Minus |
2R | 25286936 | 2R | 12300652..12300938 | 427..141 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 12300374..12300595 | 646..425 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 12298935..12299075 | 1903..1763 | 705 | 100 | Minus |
2R | 25286936 | 2R | 12300998..12301123 | 142..17 | 630 | 100 | Minus |
2L | 23513712 | 2L | 14848742..14848905 | 357..194 | 325 | 79.9 | Minus |
2R | 25286936 | 2R | 9796709..9796929 | 773..993 | 295 | 75.6 | Plus |
2R | 25286936 | 2R | 9797070..9797245 | 1082..1257 | 250 | 76.1 | Plus |
2L | 23513712 | 2L | 14845874..14845977 | 1269..1166 | 220 | 80.8 | Minus |
2R | 25286936 | 2R | 18730015..18730155 | 358..218 | 210 | 76.6 | Minus |
2R | 25286936 | 2R | 18729221..18729404 | 972..789 | 200 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:40 has no hits.
BO27103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:14 Download gff for
BO27103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8850-RB | 112..1998 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:03 Download gff for
BO27103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8850-RB | 186..2072 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:41 Download gff for
BO27103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8850-RB | 186..2072 | 17..1905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:41 Download gff for
BO27103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12300654..12300936 | 143..425 | 100 | <- | Minus |
2R | 12300998..12301123 | 17..142 | 100 | | Minus |
2R | 12298933..12299075 | 1763..1905 | 98 | <- | Minus |
2R | 12299138..12299876 | 1024..1762 | 100 | <- | Minus |
2R | 12299933..12300310 | 646..1023 | 100 | <- | Minus |
2R | 12300375..12300594 | 426..645 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:03 Download gff for
BO27103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8186438..8186580 | 1763..1905 | 98 | <- | Minus |
arm_2R | 8186643..8187381 | 1024..1762 | 100 | <- | Minus |
arm_2R | 8187438..8187815 | 646..1023 | 100 | <- | Minus |
arm_2R | 8187880..8188099 | 426..645 | 100 | <- | Minus |
arm_2R | 8188159..8188441 | 143..425 | 100 | <- | Minus |
arm_2R | 8188503..8188628 | 17..142 | 100 | | Minus |
BO27103.pep Sequence
Translation from 16 to 1921
> BO27103.pep
MDDDAEYQKLRRNMQGAQGSREGHPGSNDGISTVIYSAEGEELTINCEAE
SESSGQRDQWSRGVEFLFSCIALSVGLGNVWRFPFIALENGGGAFLIPYV
IVLLLIGRPVYYLEVIIGQFSSRGCIRAFDMAPIMRGIAYGQVYSTALAT
TYYACIMALTIRYLVASFSEVLPWTYCLVEWGKSCVATGATAANDSSIVQ
GVSSAELFFTQTVLREPESLDDNGLGTPSWDLVLCLLATWVIIGTILSKG
IRSSGKASYFLALFPYVIMIVLLIRAVTLPGAWQGIVYFLKPQWSQLLNP
HVWYAAITQMFFSLAICFGTLVMYASFNDFNKNVHKDVIIITTIDSLTSI
LAGCIIFGILGNLAFETNTKDISQVVKGGAGLAFISYPEAIAKFKYLPQL
FAVLFFFMLLVLGIGSNIGMASAVVNVVKDRFTHLPHWLLAVSASIIGFL
CGLVYMTPGGQFVLNLVDFYGCTFIALVLAIAELLAVGWIYGVKRICSDI
EFMLNVKTSFYWRICWAIVAPGLMFLVLVYMLFSYEPLTYRGVQYPPVYY
MAGWIIWGLGVLQLPFWALVTIYQQPGKTFGSKFGLAMQPTANWGPLQTQ
KFEAYIIHRKREADFKSPRGGYLFDNIFGASFLDH
BO27103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8850-PB | 629 | CG8850-PB | 1..629 | 1..629 | 3299 | 100 | Plus |
CG8850-PA | 616 | CG8850-PA | 1..616 | 14..629 | 3230 | 100 | Plus |
CG1698-PB | 654 | CG1698-PB | 73..654 | 56..629 | 1834 | 57.1 | Plus |
CG1698-PA | 654 | CG1698-PA | 73..654 | 56..629 | 1834 | 57.1 | Plus |
List-PD | 564 | CG15088-PD | 3..559 | 42..600 | 1754 | 56.7 | Plus |