BO27108.complete Sequence
412 bp assembled on 2010-08-18
GenBank Submission: KX798096
> BO27108.complete
GAAGTTATCAGTCGACATGTTCAAGTTTGTGATGATTCTCGCCGTTGTGG
GAGTGGCTACCGCCCTAGCCCCAGTTTCCCGCTCCGATGATGTACACGCT
GATGTCCTTTCCCGATCGGACGACGTTCGTGCCGACGGATTCGACTCCAG
CCTGCACACCTCAAACGGAATCGAGCAGGCCGCCAGCGGTGATGCCCATG
GCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAGGGCGAGCACGTT
GAGGTAAAGTACGTCGCGAATGAAAACGGATACCAGCCCTCGGGAGCCTG
GATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCCGCGCCGTTGCCT
GGCTGGAGTCTCACCCCCCAGCACCCGAGCACCCCCGTCATCACGCAAGC
TTTCTAGACCAT
BO27108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp2-RB | 381 | CG8697-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
Lcp2-RA | 381 | CG8697-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Lcp1-RB | 393 | CG11650-PB | 75..390 | 79..394 | 1295 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp2-RB | 927 | CG8697-RB | 243..630 | 7..394 | 1910 | 99.5 | Plus |
Lcp2-RA | 540 | CG8697-RA | 33..420 | 7..394 | 1910 | 99.5 | Plus |
Lcp1-RB | 1065 | CG11650-RB | 117..432 | 79..394 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8434094..8434459 | 394..29 | 1830 | 100 | Minus |
2R | 25286936 | 2R | 8430748..8431063 | 394..79 | 1295 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:44:12 has no hits.
BO27108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:36 Download gff for
BO27108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp2-RA | 48..420 | 22..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:46 Download gff for
BO27108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp2-RA | 48..420 | 22..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:22 Download gff for
BO27108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp2-RA | 48..420 | 22..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:22 Download gff for
BO27108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8434092..8434462 | 22..396 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:46 Download gff for
BO27108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4321597..4321967 | 22..396 | 98 | | Minus |
BO27108.pep Sequence
Translation from 16 to 412
> BO27108.pep
MFKFVMILAVVGVATALAPVSRSDDVHADVLSRSDDVRADGFDSSLHTSN
GIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWIPTPP
PIPEAIARAVAWLESHPPAPEHPRHHASFLDH
BO27108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp2-PB | 126 | CG8697-PB | 1..126 | 1..126 | 679 | 100 | Plus |
Lcp2-PA | 126 | CG8697-PA | 1..126 | 1..126 | 679 | 100 | Plus |
Lcp1-PB | 130 | CG11650-PB | 1..130 | 1..126 | 624 | 90 | Plus |
Lcp1-PA | 130 | CG11650-PA | 1..130 | 1..126 | 624 | 90 | Plus |
Lcp4-PB | 112 | CG2044-PB | 1..109 | 1..117 | 298 | 48.7 | Plus |