BO27109.complete Sequence
1297 bp assembled on 2010-09-17
GenBank Submission: KX795496
> BO27109.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATGGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCATCCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGGCAAGCTTTCTAGACCAT
BO27109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-RB | 1266 | CG18858-PB | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| CG18858-RA | 1266 | CG18858-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| CG31683-RB | 1266 | CG31683-PB | 1..1263 | 17..1279 | 6285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-RB | 2029 | CG18858-RB | 431..1693 | 17..1279 | 6315 | 100 | Plus |
| CG18858-RA | 1817 | CG18858-RA | 431..1693 | 17..1279 | 6315 | 100 | Plus |
| CG31683-RB | 1823 | CG31683-RB | 437..1699 | 17..1279 | 6285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20457468..20457994 | 1059..533 | 2620 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20448351..20448873 | 1059..537 | 2600 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20448066..20448287 | 1279..1058 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 20457183..20457404 | 1279..1058 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:42:45 has no hits.
BO27109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:26:32 Download gff for
BO27109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 438..1700 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:29 Download gff for
BO27109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 431..1693 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:43 Download gff for
BO27109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 431..1693 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:43 Download gff for
BO27109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20457181..20457402 | 1060..1281 | 99 | <- | Minus |
| 2L | 20457468..20457990 | 537..1059 | 100 | <- | Minus |
| 2L | 20458059..20458430 | 165..536 | 100 | <- | Minus |
| 2L | 20458498..20458645 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:29 Download gff for
BO27109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20458059..20458430 | 165..536 | 100 | <- | Minus |
| arm_2L | 20458498..20458645 | 17..164 | 100 | | Minus |
| arm_2L | 20457181..20457402 | 1060..1281 | 99 | <- | Minus |
| arm_2L | 20457468..20457990 | 537..1059 | 100 | <- | Minus |
BO27109.pep Sequence
Translation from 16 to 1297
> BO27109.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPMVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPSEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQPASFLDH
BO27109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-PB | 421 | CG18858-PB | 1..421 | 1..421 | 2266 | 100 | Plus |
| CG18858-PA | 421 | CG18858-PA | 1..421 | 1..421 | 2266 | 100 | Plus |
| CG31683-PB | 421 | CG31683-PB | 1..421 | 1..421 | 2259 | 99.5 | Plus |
| CG31683-PA | 421 | CG31683-PA | 1..421 | 1..421 | 2259 | 99.5 | Plus |
