Clone BO27113 Report

Search the DGRC for BO27113

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG4095-RA
Protein status:BO27113.pep: Imported from assembly
Sequenced Size:1543

Clone Sequence Records

BO27113.complete Sequence

1543 bp assembled on 2010-09-17

GenBank Submission: KX798920

> BO27113.complete
GAAGTTATCAGTCGACATGCTGAAGCAAAACAATGGTCTGCATCTGGCTA
GGCGCAATCTCTGGGTGGTTTGCAGTGGCCTCCGTGCCAAGGATTGCGAC
AGTGGCGGTAAGGGCGGCAAGGGCAAGGAGAATGGCAAGTTTCGTACGGA
GAAGGACACCTTCGGGGAGCTAAAGGTGCCGGCGGACAAGCTGTACGGCG
CACAGACGATGCGCTCCAAATTGAATTTTCCCATTGGCGACATAGGCGAA
CGTATGCCGATGCCGGTGATCCAGGCCATGGGCATACTGAAGAAGGCATG
TGCCGAGGTCAACAAGGATTACGGACTAGATGGCAAGGTGTCGGATGCCG
TATCCTGCGCCTGCGACGATGTCATTTCCGGCAAGCTATACAAACAGGGT
CACTTCCCATTGGTCATCTGGCAAACCGGTTCGGGCACCCAGACCAATAT
GAACACCAACGAGGTGATCAGCAATGCGGCCATTAAGATGATGGGCGGCG
AACTGGGCAGCAAGAAGCCGGTGCATCCCAACGATCATGTGAACAAGTCG
CAGAGCTCCAACGACACCTTCCCCACGGCCATTCACATTTCGGTGGGCAT
GGAGCTGAACGAGCGGCTTGTTCCGGCGGTTACACACTTGAGGGATGCCC
TCAAGTCCAAGTCGGATGAGTTCAAGGACATCATCAAGATCGGACGCACC
CACTTGATGGACGCAGTTCCGCTGACTTTGGGCCAGGAATTCAGCGGTTA
TACACAGCAGTTGACCAACGGTCTGGAAAGGATCAAGGGCTGTCTGCCGC
GCGTCTATGAGCTGGCTCTGGGCGGCACTGCTGTGGGTACGGGTCTGAAC
ACACGCAAGGGATTCGCCGAGAAGGTGGCCAAGCGCATTTCGGAGCTAAC
CTGCTTGCCCTTCGTGTCGGCGCCCAACAAGTTCGAGGCACTGGCTGCCC
GCGATGCCATGGTGGAGGTGCATGGTGTGCTCAACACGATCGCCGTCAGC
CTGATGAAGATCGCCAACGATATCCGATTGCTGGGATCGGGTCCGCGTTG
CGGTCTGGGCGAACTAATGCTGCCGGAGAACGAGCCCGGTAGCTCCATCA
TGCCCGGCAAGGTGAATCCCACGCAATGCGAATCAATGACCATGCTGTGT
GCCCAGGTGATGGGCAATCAGGTGGCGGTGACCATCGGCGGCTCCAACGG
GCACTTCGAGCTAAATGTATTCAAACCCCTGGTCGTGTCCAATGTGCTGC
GCTCCATTCGCTTGTTGGCTGATGGCAGCATGACCTTCAGCAAGAACTGC
GTGGAGGGACTGCAGGCCAACAAGGAGAGGATCGACAAGATCATGAACGA
GTCCTTGATGCTGGTGACCGCGCTGAATCCGCACATTGGCTATGACAAGG
CCGCCCTGATCGCCAAGACGGCGCACAAGAATAAGACGACCTTGAAGGAG
GAGGCACTGAAGACCGGAATTACCGAAGAGCAGTTCAAGGAGTGGGTCAA
TCCCAAGGAGATGCTGGGACCGAAGGCAAGCTTTCTAGACCAT

BO27113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4095-RA 1512 CG4095-PA 1..1509 17..1525 7545 100 Plus
l(1)G0255-RB 1404 CG4094-PB 14..1328 138..1455 2790 81 Plus
l(1)G0255-RA 1488 CG4094-PA 98..1412 138..1455 2790 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4095-RA 1647 CG4095-RA 70..1578 17..1525 7545 100 Plus
l(1)G0255-RB 1668 CG4094-RB 132..1446 138..1455 2790 81 Plus
l(1)G0255-RA 1740 CG4094-RA 204..1518 138..1455 2790 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6682497..6683314 455..1272 4045 99.6 Plus
X 23542271 X 6680566..6681364 462..1260 2180 84.9 Plus
3L 28110227 3L 11464094..11464987 1257..364 1455 77.5 Minus
X 23542271 X 6683370..6683627 1268..1525 1290 100 Plus
X 23542271 X 6682218..6682424 259..465 1035 100 Plus
X 23542271 X 6681970..6682134 95..259 825 100 Plus
2L 23513712 2L 10190249..10190497 1195..947 510 80.3 Minus
X 23542271 X 6681836..6681913 17..94 390 100 Plus
3L 28110227 3L 11463778..11464028 1518..1268 385 76.9 Minus
X 23542271 X 6681436..6681623 1268..1455 340 78.7 Plus
X 23542271 X 6680304..6680488 266..453 230 76.1 Plus
Blast to na_te.dros performed on 2014-11-28 07:36:52 has no hits.

BO27113.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:57 Download gff for BO27113.complete
Subject Subject Range Query Range Percent Splice Strand
CG4095-RA 82..1590 17..1527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:28 Download gff for BO27113.complete
Subject Subject Range Query Range Percent Splice Strand
CG4095-RA 70..1578 17..1527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:12 Download gff for BO27113.complete
Subject Subject Range Query Range Percent Splice Strand
CG4095-RA 70..1578 17..1527 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:12 Download gff for BO27113.complete
Subject Subject Range Query Range Percent Splice Strand
X 6681836..6681913 17..94 100 -> Plus
X 6681970..6682134 95..259 100 -> Plus
X 6682219..6682422 260..463 100 -> Plus
X 6682506..6683310 464..1268 100 -> Plus
X 6683371..6683627 1269..1527 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:28 Download gff for BO27113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6575869..6575946 17..94 100 -> Plus
arm_X 6576003..6576167 95..259 100 -> Plus
arm_X 6576252..6576455 260..463 100 -> Plus
arm_X 6576539..6577343 464..1268 100 -> Plus
arm_X 6577404..6577660 1269..1527 99   Plus

BO27113.pep Sequence

Translation from 16 to 1543

> BO27113.pep
MLKQNNGLHLARRNLWVVCSGLRAKDCDSGGKGGKGKENGKFRTEKDTFG
ELKVPADKLYGAQTMRSKLNFPIGDIGERMPMPVIQAMGILKKACAEVNK
DYGLDGKVSDAVSCACDDVISGKLYKQGHFPLVIWQTGSGTQTNMNTNEV
ISNAAIKMMGGELGSKKPVHPNDHVNKSQSSNDTFPTAIHISVGMELNER
LVPAVTHLRDALKSKSDEFKDIIKIGRTHLMDAVPLTLGQEFSGYTQQLT
NGLERIKGCLPRVYELALGGTAVGTGLNTRKGFAEKVAKRISELTCLPFV
SAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIRLLGSGPRCGLGEL
MLPENEPGSSIMPGKVNPTQCESMTMLCAQVMGNQVAVTIGGSNGHFELN
VFKPLVVSNVLRSIRLLADGSMTFSKNCVEGLQANKERIDKIMNESLMLV
TALNPHIGYDKAALIAKTAHKNKTTLKEEALKTGITEEQFKEWVNPKEML
GPKASFLDH

BO27113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4095-PA 503 CG4095-PA 1..503 1..503 2605 100 Plus
l(1)G0255-PB 467 CG4094-PB 5..467 41..503 1958 82.1 Plus
l(1)G0255-PA 495 CG4094-PA 33..495 41..503 1958 82.1 Plus
CG6140-PB 470 CG6140-PB 10..469 43..502 1793 73.9 Plus
CG6140-PA 470 CG6140-PA 10..469 43..502 1793 73.9 Plus