BO27118.complete Sequence
1225 bp assembled on 2010-09-17
> BO27118.complete
GAAGTTATCAGTCGACATGACCGTGACCGCCACACCGATGCCGGACAATC
TGCGGGTGAAAGCCTTATCCGAGTACCGAAAGAAGTTGCTAGAGCACAAG
GAAATCGAGGGACGCCTCAAAGAAAAGCGCGAGGAGATCAAGGATCTGAC
CAAGCTGTACGACAAGTCGGAGAACGATCTAAAGGCCCTGCAGAGCGTGG
GACAGATCGTTGGTGAGGTGCTGAAGCAGCTGACCGAGGATAAATTCATT
GTGAAGGCCACCAATGGACCCCGCTACGTGGTCGGCTGCCGCCGGCAGCT
GGACAAAGCCAAGCTGAAGTCCGGAACTCGTGTGGCCCTCGACATGACCA
CACTGACCATTATGCGCTACTTGCCGCGCGAGGTGGACCCACTGGTGTAC
AATATGTCGCACGAGGATCCCGGGGATGTCACCTACTCGGCCATCGGCGG
CCTAACCGACCAAATTCGCGAGCTGCGCGAAGTGATCGAGCTGCCCCTAC
TGAATCCGGAGCTCTTCCTGCGCGTCGGCATCACGCCACCGAAGGGTTGT
TTGCTGTACGGACCTCCTGGCACCGGCAAGACCCTGCTGGCCCGTGCAGT
GGCCTCCCAGCTGGACGCCAACTTCCTCAAGGTCGTGTCCTCGGCGATTG
TCGACAAGTATATTGGCGAGAGTGCGCGTCTCATTCGCGAGATGTTCAAC
TATGCCCGCGACCATCAGCCCTGCATCATTTTCATGGACGAAATCGACGC
TATCGGTGGTCGGCGCTTCTCCGAGGGCACCTCTGCCGATCGCGAGATCC
AGCGCACCCTGATGGAGCTGCTCAACCAGATGGACGGCTTCGATTCGCTT
GGCCAAGTCAAGATGATCATGGCAACCAATCGTCCGGACACCCTCGATCC
TGCCCTTCTGCGTCCGGGTCGCTTGGACAGGAAGATCGAGATTCCGCTGC
CCAACGAGCAGGCTAGGTTGGAAATTCTCAAGATTCACGCACTGAAGATC
GCCAAGCACGGCGAAATCGACTACGAGGCCATTGTCAAGCTGTCGGACAA
CTTTAATGGCGCTGATCTGCGTAATGTCTGCACGGAGGCGGGTCTCTTTG
CCATTCGTGCGGAGCGGGAGTACGTCATCCAGGAGGACTTCATGAAGGCG
GTGCGCAAGGTGTCGGACAACAAGAAGTTGGAGAGCAAGCTGGACTACAA
GCCCGTCGCAAGCTTTCTAGACCAT
BO27118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4-RB | 1194 | CG3455-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| Rpt4R-RB | 1197 | CG7257-PB | 144..1190 | 157..1203 | 1665 | 77.3 | Plus |
| Rpt4R-RA | 1197 | CG7257-PA | 144..1190 | 157..1203 | 1665 | 77.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4-RB | 1465 | CG3455-RB | 123..1313 | 17..1207 | 5955 | 100 | Plus |
| Rpt4R-RB | 1502 | CG7257-RB | 336..1382 | 157..1203 | 1665 | 77.3 | Plus |
| Rpt4R-RA | 1391 | CG7257-RA | 225..1271 | 157..1203 | 1665 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6290053..6290775 | 968..246 | 3615 | 100 | Minus |
| 3L | 28110227 | 3L | 11942791..11943365 | 629..1203 | 910 | 77.2 | Plus |
| 3L | 28110227 | 3L | 11942247..11942724 | 157..634 | 785 | 77.6 | Plus |
| X | 23542271 | X | 6289785..6289928 | 1107..964 | 720 | 100 | Minus |
| X | 23542271 | X | 6290839..6290958 | 245..126 | 600 | 100 | Minus |
| X | 23542271 | X | 6291015..6291123 | 125..17 | 545 | 100 | Minus |
| X | 23542271 | X | 6289622..6289722 | 1207..1107 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 7652824..7653026 | 928..726 | 205 | 73.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:49:31 has no hits.
BO27118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:54 Download gff for
BO27118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RA | 121..1311 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:16 Download gff for
BO27118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1313 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:19:08 Download gff for
BO27118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1313 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:19:08 Download gff for
BO27118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6289785..6289925 | 967..1107 | 100 | <- | Minus |
| X | 6289620..6289721 | 1108..1209 | 98 | <- | Minus |
| X | 6290055..6290775 | 246..966 | 100 | <- | Minus |
| X | 6290839..6290958 | 126..245 | 100 | <- | Minus |
| X | 6291015..6291123 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:16 Download gff for
BO27118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6183653..6183754 | 1108..1209 | 98 | <- | Minus |
| arm_X | 6183818..6183958 | 967..1107 | 100 | <- | Minus |
| arm_X | 6184088..6184808 | 246..966 | 100 | <- | Minus |
| arm_X | 6184872..6184991 | 126..245 | 100 | <- | Minus |
| arm_X | 6185048..6185156 | 17..125 | 100 | | Minus |
BO27118.pep Sequence
Translation from 16 to 1225
> BO27118.pep
MTVTATPMPDNLRVKALSEYRKKLLEHKEIEGRLKEKREEIKDLTKLYDK
SENDLKALQSVGQIVGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDKAKL
KSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQI
RELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLD
ANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR
FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP
GRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGAD
LRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKKLESKLDYKPVASF
LDH
BO27118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4-PB | 397 | CG3455-PB | 1..397 | 1..397 | 2011 | 100 | Plus |
| Rpt4R-PB | 398 | CG7257-PB | 6..398 | 5..397 | 1695 | 82.7 | Plus |
| Rpt4R-PA | 398 | CG7257-PA | 6..398 | 5..397 | 1695 | 82.7 | Plus |
| Rpt1-PA | 433 | CG1341-PA | 33..416 | 12..382 | 864 | 45 | Plus |
| Rpt6-PA | 405 | CG1489-PA | 24..389 | 14..382 | 862 | 48 | Plus |
