BO27131.complete Sequence
1120 bp assembled on 2010-09-17
GenBank Submission: KX799793
> BO27131.complete
GAAGTTATCAGTCGACATGAAGCTCGGATTTCTGGGGCTTTTTGGCATGG
TGCTCATGATCATGTTCTACGAGGGAGCAGAAGGGTATACCGTCAATGAG
CTGCGCGATGTCCTGGGGATCTATGTCGATTATCCAACACTGCGCAGGTG
GTACGAGGATGTCCGAGCTTATCACTATTTAAATTCGGAAAACACAAAAC
TGTTTTCGCTGCGTTACGCTTACTACGACGACGTAGGAGATTTAGAACTC
GTGAAAGGGTACAACAGTGTAGTCCTAGAAGGAGTAGGAGAAGGAAATGT
GGTTCTTCGAGAGGGTCGGCCAAGGGGTGTGGACTTCGACCAGGGGGCGA
GTATAATAATCAACGACGATATCGACAAAGCCTCTCATGCGAAAATCTTC
AGTTCTTATAGCCGTCGTTCGTTCAATAGTACAGTAACTGTGCTGGGGAT
TACTGTTAGCTACTTTAAGGCCAAATGGAAGTATCCATTCGATAAGTCCC
AGACGAAAGTGGAACAGTTTTACAACGACGGCGGCTCGCCGGCAGGTAAG
GTGGAGATGATGGTGCAAACGGGGAAGTATGCCTACGTCAATAATGTAAA
GGGTCTGCAAGCGGATGTCCTGGAGCTACCTTTTGGGGAACATGAGCTAG
TAATGATCGTCTTACTGCCGAAGTCATCCCAGGGAGTTAACCTGGTGCTC
TACCAATTGAAGAACCTGGGACTACATCGCCTCCTTGAGAAACTCGAGGC
CTCCAAGAATGAAACTGATGTAGAAGTCAAGCTTCCCAAGTTCGATACGC
GATCCGTACTTTCACTCGAAGATACCGTATATGACGCTGGACTAACGGAT
CTGAGGAACGACTTCGCAGATCTAGATAAATTGCTGATTGCTATCGGTCA
CAGAGGTGCGTGCCTCACCCTCTACCACCAATTCGCCAGGATCGTCGTAG
ATGAAGAGGGTTTGCCTAATGCTGTTCCGCAGAAGTCTTCTGGAAAAAAT
AACATCAAGTTCCATGTAAACAGGCCGTTTGCATACCTTGTCCTACAAAA
GAAACACAAATTGCTCATTCACTCCGGAGTCTTTCGGGAAGGTGAGATCC
AGGCAAGCTTTCTAGACCAT
BO27131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn77Bb-RA | 1089 | CG6663-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| Spn77Bc-RB | 1251 | CG6289-PB | 202..1248 | 56..1102 | 4545 | 95.6 | Plus |
| Spn77Bc-RA | 1251 | CG6289-PA | 202..1248 | 56..1102 | 4545 | 95.6 | Plus |
| Spn77Bc-RB | 1251 | CG6289-PB | 1..40 | 17..56 | 185 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn77Bb-RA | 1161 | CG6663-RA | 35..1120 | 17..1102 | 5430 | 100 | Plus |
| Spn77Bc-RB | 1430 | CG6289-RB | 241..1287 | 56..1102 | 4545 | 95.6 | Plus |
| Spn77Bc-RA | 1440 | CG6289-RA | 251..1297 | 56..1102 | 4545 | 95.6 | Plus |
| Spn77Bc-RB | 1430 | CG6289-RB | 40..79 | 17..56 | 185 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20321638..20321994 | 480..836 | 1785 | 100 | Plus |
| 3L | 28110227 | 3L | 20343497..20343851 | 480..834 | 1610 | 96.9 | Plus |
| 3L | 28110227 | 3L | 20321269..20321572 | 178..481 | 1520 | 100 | Plus |
| 3L | 28110227 | 3L | 20343128..20343431 | 178..481 | 1490 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20322051..20322317 | 836..1102 | 1335 | 100 | Plus |
| 3L | 28110227 | 3L | 20343910..20344176 | 836..1102 | 1020 | 92.1 | Plus |
| 3L | 28110227 | 3L | 20321041..20321201 | 17..177 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 20342939..20343060 | 56..177 | 445 | 91 | Plus |
| 3L | 28110227 | 3L | 20342738..20342777 | 17..56 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:44:59 has no hits.
BO27131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:48 Download gff for
BO27131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6663-RA | 25..1110 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:52 Download gff for
BO27131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn77Bb-RA | 35..1120 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:32 Download gff for
BO27131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn77Bb-RA | 35..1120 | 17..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:32 Download gff for
BO27131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20321041..20321201 | 17..177 | 100 | -> | Plus |
| 3L | 20321269..20321572 | 178..481 | 100 | -> | Plus |
| 3L | 20321640..20321993 | 482..835 | 100 | -> | Plus |
| 3L | 20322051..20322317 | 836..1104 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:52 Download gff for
BO27131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20314141..20314301 | 17..177 | 100 | -> | Plus |
| arm_3L | 20314369..20314672 | 178..481 | 100 | -> | Plus |
| arm_3L | 20314740..20315093 | 482..835 | 100 | -> | Plus |
| arm_3L | 20315151..20315417 | 836..1104 | 99 | | Plus |
BO27131.pep Sequence
Translation from 16 to 1120
> BO27131.pep
MKLGFLGLFGMVLMIMFYEGAEGYTVNELRDVLGIYVDYPTLRRWYEDVR
AYHYLNSENTKLFSLRYAYYDDVGDLELVKGYNSVVLEGVGEGNVVLREG
RPRGVDFDQGASIIINDDIDKASHAKIFSSYSRRSFNSTVTVLGITVSYF
KAKWKYPFDKSQTKVEQFYNDGGSPAGKVEMMVQTGKYAYVNNVKGLQAD
VLELPFGEHELVMIVLLPKSSQGVNLVLYQLKNLGLHRLLEKLEASKNET
DVEVKLPKFDTRSVLSLEDTVYDAGLTDLRNDFADLDKLLIAIGHRGACL
TLYHQFARIVVDEEGLPNAVPQKSSGKNNIKFHVNRPFAYLVLQKKHKLL
IHSGVFREGEIQASFLDH
BO27131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn77Bb-PA | 362 | CG6663-PA | 1..362 | 1..362 | 1869 | 100 | Plus |
| Spn77Bc-PB | 416 | CG6289-PB | 67..416 | 13..362 | 1664 | 92 | Plus |
| Spn77Bc-PA | 416 | CG6289-PA | 67..416 | 13..362 | 1664 | 92 | Plus |
| Spn77Ba-PC | 450 | CG6680-PC | 108..445 | 13..357 | 407 | 32.4 | Plus |
| Spn77Ba-PB | 450 | CG6680-PB | 108..445 | 13..357 | 407 | 32.4 | Plus |
