BO27133.complete Sequence
2545 bp assembled on 2010-10-15
> BO27133.complete
GAAGTTATCAGTCGACATGTTTTCTTACTGGACCAAACAGAATATATCAA
GCTCAGTAGATGGAAAAAAGATGGACAAAGTTTCTACCATGAGAAAAAAA
AATTCAACAAAAGTTAAAATGGAGAAAAAAGAAACAGTTGTACCGATTAC
AGAAATGCGTGCTCTGGAATTTCAAGATTTCCTTAAGCGGGTACAGACGT
TACAAATGTCGCACAACGAAAGCCGCGATTTAGTCAATGGACCTAATATC
TGCAGTTCCATGGATATTGAAGTCGGCGAAGAACCTCCTACGACATCTTT
TGCCGATAACATAGATAAAGCGTGTCCTTTACCAGTGCTGCGATCATCTG
ATTGTGATTGTGTGCCACTTTGTATGACAAATATTCGTGTATCAGTTGGT
ATTGACAAAGACTTAGAAATGATTCTTGAAATGGATCCGAGTATTGTAGA
TTTGGGTGATATTAGCATTGATGAAACTGCAGAACCGCGCATAGTGGGCT
TACCTCCACTTTCGGGTGGACCGACATTTAAAACTGCTACTCCCACTTCA
CGAACACAACTAAAACTGCAGCTACAACGTGAACAACAGCAACAAATGAT
GATACAACAACAGACATTAGACACTGCTATGGACCCAAAAATGCATCTAT
TGTTTGGCAGTGGGCAGGGGCTTATGGAATCGGAATTCATTGACAGCGGT
AGTACCAGTGCTTGTGGCAGCGGGTCATCCAGTTTAGAACAAATGTCACA
GTTAGTGCAAATGGACAATTTAATTGATTCGTCAAGTGGAGCCAAGCTTA
AAGTTCCTCTTCAAAGTATCGGAGTAGATGTGCCACCCCAAGTGCTGCAG
GTCAGTACAGTGCTTGAAAACCCTACAAGGTATCACGTTATCCAAAAGCA
AAAGAATCAAGTGAGGCAATATCTCAGCGAATCCTTTAAGCCGTCTATGT
GGGGCAGTCATACCAGCGAAATAAAATTAGCAAATAATTCTGCGTCAACG
GGAAATCTTCAAAATTCATCTTTACAGAAAGGTATTTGCGATCCATTGGA
GCGTACAAACCGATTTGGATGCGATTCGGCTGTGAGTGCTAAAAGAATTA
TGCCTTCCGATGACGCAATGCCTATTTCCCCATTCGGTGGTAGTTTTGTA
CGATGTGATGACATAAATCCAATTGAGCCAACTGTATTACGACCTAATAG
TCATGGTGCTGGGGAACCAGAAAATGCACATAGAACGGCCCAGTTGGGAC
TTAGTAAAGCTAATTCAAGCCTAAGTTCAACGCGTTCTTCTTCAGGGATT
GTTAATTCAATTCGAATTTCCAGTACATCAAGCTCGTTACAGTCTACCTC
AGCTCCTATTTCGCCGAGCGTAAGTTCGGTTGCAACGAGTGTCTCTGAGC
CAGATGACATCTTCGATGATATATTACAAAATGACTCTTTTAACTTTGAT
AAAAACTTCAACTCTGAGCTTTCAATTAAACAGGAACCTCAAAATTTAAC
TGATGCTGAAATGAATGCCCTAGCCAAGGACAGACAAAAGAAAGACAACC
ATAATATGATTGAGCGAAGGCGACGCTTTAATATAAATGACAGAATAAAA
GAGCTTGGTACCCTTTTGCCAAAGGGCAGTGATGCTTTTTACGAAGTAGT
TCGAGACATTCGTCCAAACAAGGGGACAATCTTGAAGTCCTCTGTTGACT
ACATTAAATGCTTGAAACATGAGGTGACTCGCTTAAGACAAAATGAGTTA
CGTCAACGTCAAGTAGAGTTGCAAAATCGAAAGCTCATGTCTCGAATAAA
AGAATTGGAAATGCAGGCCAAGTCCCATGGAATTTTGTTATCAGAAAACC
ACCTAACATCACTATCAGCGCCTACTCAACCTTATCTTAAAAGTTTTAGC
CTGTCTCCTACTGCTTCTCGGAGTCGTCGATCACTTTTTGACCAACCTGT
TGAAAAAAAAATACAAGTTATTGATGGTGCCGATGGAAATATGGGAATGA
ATCAGGTTGATGAGTTTATGGAAGATTGCAAGTATGCAGTACAAGGCGGC
GATCCGATGTTGTCCTCGCATAGTCACATGCAATCCGCGCCACAATCACC
GAGTTCAAAAACTTTGAATAGTGGAAGTTTTGAACCAAAGAATTTTTCGG
AGGCTGATGAAAGCCTTTTTAGAGGCAAATCAAGTTTAGCATCAGATGAC
TGTTGCGGTATAAATTGCAGTACTTCGTGCTATATTCAACACCAATTGAC
TTCGCGTGAGGGCCATCCAAATCATTCTCACCACACGGGTATACGAGAAA
TTCATAGTTTGTCTGATTCGGCTCAAAACTCAGAGTTTAGTAGGCTTGAG
CATTGCGATGATCCACTTCTCTCATCTTCCCATAGGTCACTTGGCACCGT
AGACGAAGATCAACATAATTCAGTTGATATGTCTGCAGTCATGGTACACG
ACTCCCTATCCTCTTTGGTAGATGACAACAATAGCGAAACAATGGTTCTT
GCATCTGACACATTGGATATTGAGTTAGCAAGCTTTCTAGACCAT
BO27133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-RC | 2514 | CG43369-PC | 1..2511 | 17..2527 | 12555 | 100 | Plus |
| Mitf-RB | 2193 | CG43369-PB | 162..2190 | 520..2527 | 9795 | 99 | Plus |
| Mitf-RA | 2193 | CG43369-PA | 162..2190 | 520..2527 | 9795 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-RC | 3226 | CG43369-RC | 54..2564 | 17..2527 | 12555 | 100 | Plus |
| Mitf-RB | 3009 | CG43369-RB | 319..2347 | 520..2527 | 9795 | 99 | Plus |
| Mitf-RA | 4032 | CG43369-RA | 325..2353 | 520..2527 | 9795 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1222218..1222788 | 1957..2527 | 2840 | 99.8 | Plus |
| 4 | 1348131 | 4 | 1219093..1219595 | 17..519 | 2515 | 100 | Plus |
| 4 | 1348131 | 4 | 1220260..1220688 | 971..1399 | 2145 | 100 | Plus |
| 4 | 1348131 | 4 | 1219693..1220026 | 519..852 | 1670 | 100 | Plus |
| 4 | 1348131 | 4 | 1221708..1221950 | 1560..1802 | 1215 | 100 | Plus |
| 4 | 1348131 | 4 | 1221489..1221650 | 1398..1559 | 810 | 100 | Plus |
| 4 | 1348131 | 4 | 1222006..1222164 | 1802..1960 | 795 | 100 | Plus |
| 4 | 1348131 | 4 | 1220073..1220199 | 848..974 | 620 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-26 15:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6847 | 532..613 | 151 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6814 | 520..613 | 130 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2468..2531 | 556..620 | 124 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2476 | 550..612 | 121 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2425 | 530..612 | 120 | 61.9 | Plus |
BO27133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:13 Download gff for
BO27133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RB | 319..1193 | 520..1394 | 100 | <- | Plus |
| Mitf-RB | 1214..2347 | 1395..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:59 Download gff for
BO27133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RC | 61..2564 | 24..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:38 Download gff for
BO27133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RC | 61..2564 | 24..2529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:38 Download gff for
BO27133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1219694..1220024 | 520..850 | 100 | -> | Plus |
| 4 | 1220076..1220195 | 851..970 | 100 | -> | Plus |
| 4 | 1219100..1219595 | 24..519 | 100 | -> | Plus |
| 4 | 1220260..1220688 | 971..1399 | 100 | -> | Plus |
| 4 | 1221491..1221650 | 1400..1559 | 100 | -> | Plus |
| 4 | 1221708..1221949 | 1560..1801 | 100 | -> | Plus |
| 4 | 1222006..1222164 | 1802..1960 | 100 | -> | Plus |
| 4 | 1222222..1222788 | 1961..2529 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:59 Download gff for
BO27133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1225732..1225890 | 1802..1960 | 100 | -> | Plus |
| arm_4 | 1222826..1223321 | 24..519 | 100 | -> | Plus |
| arm_4 | 1223420..1223750 | 520..850 | 100 | -> | Plus |
| arm_4 | 1223802..1223921 | 851..970 | 100 | -> | Plus |
| arm_4 | 1223986..1224414 | 971..1399 | 100 | -> | Plus |
| arm_4 | 1225217..1225376 | 1400..1559 | 100 | -> | Plus |
| arm_4 | 1225434..1225675 | 1560..1801 | 100 | -> | Plus |
| arm_4 | 1225948..1226514 | 1961..2529 | 99 | | Plus |
BO27133.pep Sequence
Translation from 16 to 2545
> BO27133.pep
MFSYWTKQNISSSVDGKKMDKVSTMRKKNSTKVKMEKKETVVPITEMRAL
EFQDFLKRVQTLQMSHNESRDLVNGPNICSSMDIEVGEEPPTTSFADNID
KACPLPVLRSSDCDCVPLCMTNIRVSVGIDKDLEMILEMDPSIVDLGDIS
IDETAEPRIVGLPPLSGGPTFKTATPTSRTQLKLQLQREQQQQMMIQQQT
LDTAMDPKMHLLFGSGQGLMESEFIDSGSTSACGSGSSSLEQMSQLVQMD
NLIDSSSGAKLKVPLQSIGVDVPPQVLQVSTVLENPTRYHVIQKQKNQVR
QYLSESFKPSMWGSHTSEIKLANNSASTGNLQNSSLQKGICDPLERTNRF
GCDSAVSAKRIMPSDDAMPISPFGGSFVRCDDINPIEPTVLRPNSHGAGE
PENAHRTAQLGLSKANSSLSSTRSSSGIVNSIRISSTSSSLQSTSAPISP
SVSSVATSVSEPDDIFDDILQNDSFNFDKNFNSELSIKQEPQNLTDAEMN
ALAKDRQKKDNHNMIERRRRFNINDRIKELGTLLPKGSDAFYEVVRDIRP
NKGTILKSSVDYIKCLKHEVTRLRQNELRQRQVELQNRKLMSRIKELEMQ
AKSHGILLSENHLTSLSAPTQPYLKSFSLSPTASRSRRSLFDQPVEKKIQ
VIDGADGNMGMNQVDEFMEDCKYAVQGGDPMLSSHSHMQSAPQSPSSKTL
NSGSFEPKNFSEADESLFRGKSSLASDDCCGINCSTSCYIQHQLTSREGH
PNHSHHTGIREIHSLSDSAQNSEFSRLEHCDDPLLSSSHRSLGTVDEDQH
NSVDMSAVMVHDSLSSLVDDNNSETMVLASDTLDIELASFLDH
BO27133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-PC | 837 | CG43369-PC | 1..837 | 1..837 | 4281 | 100 | Plus |
| Mitf-PB | 730 | CG17469-PB | 55..730 | 169..837 | 3395 | 99 | Plus |
| Mitf-PA | 730 | CG17469-PA | 55..730 | 169..837 | 3395 | 99 | Plus |
| Mitf-PD | 704 | CG43369-PD | 55..704 | 169..837 | 3293 | 97.2 | Plus |
