Clone BO27135 Report

Search the DGRC for BO27135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG1287-RA
Protein status:BO27135.pep: Imported from assembly
Sequenced Size:1129

Clone Sequence Records

BO27135.complete Sequence

1129 bp assembled on 2010-09-17

GenBank Submission: KX799231

> BO27135.complete
GAAGTTATCAGTCGACATGCTTTTGGCCCGTTTAAACCATGTGCTGTCAG
GACGACCGATGCGCCTTTTGGGCCAGTCTGGATGTCCTCGCCTGTGGAGC
TCAGCCCATGCGCAGATGAACAGTAATTCCTTAAGAACACCTTCCTTGGC
TCAAGGAAAGTCAGTGATTCCTAAAAGGAATATGCAAGAACTTGGGATGA
GAAAGTATTCCAGGGAGTCGAGAGATCGCGATCGTTCCCAACTGGAGAGT
CGAACCAGAGGTCCTTCCCTCAAGGAGCGCATGATGGGACCCCCCAGTGA
AAATGCTTACTCCATGGGCAAGGGAGCGGCGGCTGGAGCGGCTCTGATGG
GTCTCGTGGGTCTGTGCTACTATGGTCTGGGCCTTGCCAATCAACCGAGT
ATCTACGACCACTCGATGGTGTGGCCCCAGTACGTGAGGGATCGTATTCA
TGCCACCTATGCCTATTTCGGAGCATCCTGTGGTGTAACAGCTGCTTCAG
CCGTTGCCTTTTTCCAATCGGATGCCATGATGGCTCTGATGACGCGTTCT
GGATGGGTTGCCTCATTGGTTACCCTGGGACTGGTAATGCTCAGTGGATC
CATTGCACAAGGCCTAGAATATCAGCCGGGATTCGGAGCCAAGCAGCTGG
CCTGGCTCGTCCACTGTGCCGTTCTGGGAGCTGTCCTGGCACCCATGTGC
CTCCTGGGTGGACCCATTTTGACCAAGGCCCTTTTGTACACCAGCGGAAT
CGTGGGTGCCCTGTCCACCGTGGCCGCTTGTGCCCCGAGCGAAAAGTTCC
TGCATATGGGCGGACCGCTGGCCATTGGATTGGGCGTGGTCTTCGCCTCC
TCGCTAGCCTCCATGTGGTTGCCGCCCACTACTGCAGTGGGGGCGGGACT
GGCCAGCATGTCGTTGTACGGCGGACTGATTCTGTTCAGCGGATTTCTTC
TGTACGATACCCAAAGGATCGTTAAGTCGGCGGAGTTGTATCCCCAGTAC
AGTAAATTCCCTTACGATCCAATTAATCATGCCCTGGCCATTTACATGGA
TGCGCTCAACATCTTTATCCGCATCGCAATTATATTGGCTGGAGACCAAA
AGAGGAAGAACGCAAGCTTTCTAGACCAT

BO27135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1287-RA 1098 CG1287-PA 1..1095 17..1111 5475 100 Plus
CG2076-RB 1026 CG2076-PB 538..991 623..1076 545 74.7 Plus
CG2076-RA 1026 CG2076-PA 538..991 623..1076 545 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1287-RA 1426 CG1287-RA 129..1228 12..1111 5485 99.9 Plus
CG2076-RB 1491 CG2076-RB 907..1360 623..1076 545 74.7 Plus
CG2076-RA 1319 CG2076-RA 735..1188 623..1076 545 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7501149..7502248 1111..12 5485 99.9 Minus
X 23542271 X 11091354..11091610 623..879 505 79.8 Plus
Blast to na_te.dros performed on 2014-11-28 05:48:03 has no hits.

BO27135.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:52 Download gff for BO27135.complete
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 134..1228 17..1113 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:08 Download gff for BO27135.complete
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 134..1228 17..1113 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:36 Download gff for BO27135.complete
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 134..1228 17..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:36 Download gff for BO27135.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7501146..7502243 17..1113 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:08 Download gff for BO27135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3326868..3327965 17..1113 99   Minus

BO27135.pep Sequence

Translation from 16 to 1129

> BO27135.pep
MLLARLNHVLSGRPMRLLGQSGCPRLWSSAHAQMNSNSLRTPSLAQGKSV
IPKRNMQELGMRKYSRESRDRDRSQLESRTRGPSLKERMMGPPSENAYSM
GKGAAAGAALMGLVGLCYYGLGLANQPSIYDHSMVWPQYVRDRIHATYAY
FGASCGVTAASAVAFFQSDAMMALMTRSGWVASLVTLGLVMLSGSIAQGL
EYQPGFGAKQLAWLVHCAVLGAVLAPMCLLGGPILTKALLYTSGIVGALS
TVAACAPSEKFLHMGGPLAIGLGVVFASSLASMWLPPTTAVGAGLASMSL
YGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIF
IRIAIILAGDQKRKNASFLDH

BO27135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1287-PA 365 CG1287-PA 1..365 1..365 1873 100 Plus
CG2076-PB 341 CG2076-PB 34..341 55..364 1089 67.1 Plus
CG2076-PA 341 CG2076-PA 34..341 55..364 1089 67.1 Plus