BO27136.complete Sequence
1654 bp assembled on 2010-09-17
GenBank Submission: KX797264
> BO27136.complete
GAAGTTATCAGTCGACATGCATAACTCCCTGGTGACCAAGTTGCTGCTGC
GGCTTTTGCTGCTCTTCGCCTTGTTGACCGGCGCCTCCATTGTGGTGCTC
ACAAAGTGCGGATTCGATGAACTGACGACGAGGGAAACTCAAGCCAATAA
TCCGAGTGAATCCAGCGGATTCAGTTACACCTTAAGCGAACGAGAGGCGG
AAATTGAGCGGCTGAAACAGGAAGTCCTGGCTCTCCGCACTCAAATCCTC
TTTCTACAGAATAATCGCAGCACTGCCAAGCCATCAAATGGCAGTCTTCA
ATTGCAAGAAACCACCGCGGGGCCACCAACTGCACCACTGGGTCACCATT
ACGACTGCAGCAGCTATATTCGCAAGCAGGTGGGCGCCGCAGAAATTCTG
CATGGACTGCCGCTGAACAACGAGTACGAGCTGATACCCTACAATCACTT
CACCTTCACGCGAGTATATCCCATCGACTTGGGCCTGGGAAAGCGCGTGG
TGGAGAAGCCCATCGGTTATCGACGACGTGACCTCATCGAGGCGGTAAAC
AAGGCGCTGGAGAGCCTGAACAGGAATCACTCAGCGAGAATACGAGCCAA
GGGAGCTGGTTCTGCAGCGGCTTACGCCTCGGATGTGATCAAATACACCC
TGGATGACTTTATCGAGGGCATATACCGCAACGAACCCACCACAGGCACC
CAGTACGAGCTGTACTTCCAGAGTGTCAAGCACCAGGCGAGTCCAGTGCG
GAGAGCCCTGGTCATGCGACCATTTGCTCCTCTGCAAACGGTGCAGCTAT
CGGAGCTATCTTCCAGTGTGGATAATAGTGGTGCCCCTCCAAGTCATAGT
CCGCCCATAATCCACGTGATACTACCGCTGGCTGGACGTCTGCACAGCTT
TCGCGGCTTCCTGCAGATGTTCGCCAAGCTAGAGGATCGTCGCCTGGAGC
TTATTGTGGTGTACTTTGGAACCAGTGGATTGGAGCAAGCTAGGAGCCTG
GCTGGACGATCCCAAAGGACTCAGTTTTTGGCACTCAATGAGACTTTCAG
TAGGGCCAAAGCTTTAAGACTGGGAGCGGAGCACATTCAACCCGCTGAGG
AGGACGTGCTGCTCTTCATGTGCGACGTGGACATTATGTTCACGACCAAG
TTCCTGGAGCGTTGTCGCTGGAATGCAGCGCCTGGAAAGAAGGTCTACTA
CCCCGTCGTATTTAGCCTGTACAATCCGCATGTGGTGTACTCACTGCAGG
GCAAGCCCTTGCCCAGCGAAGAGGAGCAACTGGTGATATCGAGGGACACC
GGTTTCTGGCGGGACTTTGGCTACGGAATGACGTGCCAGTACCGCTCGAA
CTTCCTAAAGGTGCGCGGTTTCGACGAGGAGGAGATTGTCGGTTGGGGCG
GCGAGGATGTGATGCTATACCGAAAGTATGTTCGATCAAAAATCAAGATA
ATCAGGGCCACCGACCCGGGAATCTTTCACCGCTGGCACACCAAGATCTG
TTCCAGTTCCCTGACAGCCGATCAGTATCGGGCCTGCATTCGATCGAGGG
CCTTGAATGAGGCCTCGCACGCCCAACTGGGATTCCTGGCTTTCCGGGAT
GATATAGCCGCGGCTAATGCGGCAAAGATGACATCGGCAAGCTTTCTAGA
CCAT
BO27136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12913-RB | 1623 | CG12913-PB | 1..1620 | 17..1636 | 8100 | 100 | Plus |
CG12913-RA | 1623 | CG12913-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12913-RB | 2523 | CG12913-RB | 250..1869 | 17..1636 | 8100 | 100 | Plus |
CG12913-RA | 2002 | CG12913-RA | 250..1869 | 17..1636 | 8100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10252987..10254025 | 17..1055 | 5195 | 100 | Plus |
2R | 25286936 | 2R | 10254335..10254639 | 1191..1495 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 10254699..10254841 | 1494..1636 | 715 | 100 | Plus |
2R | 25286936 | 2R | 10254139..10254278 | 1055..1194 | 700 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3983..4015 | 135..167 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6940 | 77..17 | 116 | 65.6 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 667..716 | 91..42 | 114 | 74.5 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8549..8598 | 91..42 | 114 | 74.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2646 | 76..40 | 113 | 78.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6860 | 76..40 | 113 | 78.4 | Minus |
BO27136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:51 Download gff for
BO27136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12913-RA | 214..1833 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:05 Download gff for
BO27136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12913-RA | 250..1869 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:32 Download gff for
BO27136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12913-RA | 250..1869 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:32 Download gff for
BO27136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10252987..10254025 | 17..1055 | 100 | -> | Plus |
2R | 10254140..10254276 | 1056..1192 | 100 | -> | Plus |
2R | 10254337..10254639 | 1193..1495 | 100 | -> | Plus |
2R | 10254701..10254841 | 1496..1638 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:05 Download gff for
BO27136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6140492..6141530 | 17..1055 | 100 | -> | Plus |
arm_2R | 6141645..6141781 | 1056..1192 | 100 | -> | Plus |
arm_2R | 6141842..6142144 | 1193..1495 | 100 | -> | Plus |
arm_2R | 6142206..6142346 | 1496..1638 | 98 | | Plus |
BO27136.pep Sequence
Translation from 16 to 1654
> BO27136.pep
MHNSLVTKLLLRLLLLFALLTGASIVVLTKCGFDELTTRETQANNPSESS
GFSYTLSEREAEIERLKQEVLALRTQILFLQNNRSTAKPSNGSLQLQETT
AGPPTAPLGHHYDCSSYIRKQVGAAEILHGLPLNNEYELIPYNHFTFTRV
YPIDLGLGKRVVEKPIGYRRRDLIEAVNKALESLNRNHSARIRAKGAGSA
AAYASDVIKYTLDDFIEGIYRNEPTTGTQYELYFQSVKHQASPVRRALVM
RPFAPLQTVQLSELSSSVDNSGAPPSHSPPIIHVILPLAGRLHSFRGFLQ
MFAKLEDRRLELIVVYFGTSGLEQARSLAGRSQRTQFLALNETFSRAKAL
RLGAEHIQPAEEDVLLFMCDVDIMFTTKFLERCRWNAAPGKKVYYPVVFS
LYNPHVVYSLQGKPLPSEEEQLVISRDTGFWRDFGYGMTCQYRSNFLKVR
GFDEEEIVGWGGEDVMLYRKYVRSKIKIIRATDPGIFHRWHTKICSSSLT
ADQYRACIRSRALNEASHAQLGFLAFRDDIAAANAAKMTSASFLDH
BO27136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12913-PB | 540 | CG12913-PB | 1..540 | 1..540 | 2782 | 100 | Plus |
CG12913-PA | 540 | CG12913-PA | 1..540 | 1..540 | 2782 | 100 | Plus |
CG9220-PD | 832 | CG9220-PD | 506..792 | 261..512 | 297 | 30.5 | Plus |
CG9220-PC | 832 | CG9220-PC | 506..792 | 261..512 | 297 | 30.5 | Plus |