BO27138.complete Sequence
982 bp assembled on 2010-09-17
GenBank Submission: KX799380
> BO27138.complete
GAAGTTATCAGTCGACATGGCCCGCATCGTTGAAAGCAATTTTGTGCCAC
TCGCCGTGGGTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTAT
CTGCTGAATAAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGC
TCGGCTGCGCACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCA
TCGAAAAGGAGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTG
CCCTCCAAGCAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCT
GATCGCCACCATCGACAATGAGCTAATAATTCGGCCATACACTCCGATAT
CGTCTGATGAGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTC
AAGGATTCGCATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCT
GGAGCAGCTCGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTA
GGCTACAATATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAG
GATCCTCCAAAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGG
CACTGGCATTACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCA
GCGATAAGGATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAA
AAGGACATTCTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCC
TGACCAGTTCAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGC
AGTATAGCGTTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTT
CCGGCCAAGGACGATACCATTGTGTTGCTTTGCGGCCCACCACCCATGAT
TAACTTTGCCTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACA
CCCGTTTTGCCTACGCAAGCTTTCTAGACCAT
BO27138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5946-RF | 951 | CG5946-PF | 1..948 | 17..964 | 4725 | 99.9 | Plus |
| CG5946-RB | 951 | CG5946-PB | 1..948 | 17..964 | 4725 | 99.9 | Plus |
| CG5946-RA | 942 | CG5946-PA | 14..939 | 39..964 | 4615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5946-RF | 1460 | CG5946-RF | 348..1296 | 16..964 | 4730 | 99.9 | Plus |
| CG5946-RB | 1686 | CG5946-RB | 286..1234 | 16..964 | 4730 | 99.9 | Plus |
| CG5946-RA | 1224 | CG5946-RA | 135..1060 | 39..964 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11818254..11818907 | 694..41 | 3270 | 100 | Minus |
| 3L | 28110227 | 3L | 11817147..11817318 | 964..793 | 845 | 99.4 | Minus |
| 3L | 28110227 | 3L | 11818086..11818189 | 796..693 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:44:20 has no hits.
BO27138.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:46 Download gff for
BO27138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RB | 269..1216 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:43 Download gff for
BO27138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RB | 287..1234 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:16 Download gff for
BO27138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RB | 287..1234 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:16 Download gff for
BO27138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11817145..11817316 | 795..966 | 98 | <- | Minus |
| 3L | 11818088..11818187 | 695..794 | 100 | <- | Minus |
| 3L | 11818254..11818907 | 41..694 | 100 | <- | Minus |
| 3L | 11821834..11821857 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:43 Download gff for
BO27138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11810245..11810416 | 795..966 | 98 | <- | Minus |
| arm_3L | 11811188..11811287 | 695..794 | 100 | <- | Minus |
| arm_3L | 11811354..11812007 | 41..694 | 100 | <- | Minus |
| arm_3L | 11814934..11814957 | 17..40 | 100 | | Minus |
BO27138.pep Sequence
Translation from 16 to 982
> BO27138.pep
MARIVESNFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTL
VDPNDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATID
NELIIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLEL
GDKISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITP
MLQLAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKI
WYTVDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACN
PALDKLGYHPDTRFAYASFLDH
BO27138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5946-PF | 316 | CG5946-PF | 1..316 | 1..316 | 1648 | 100 | Plus |
| CG5946-PB | 316 | CG5946-PB | 1..316 | 1..316 | 1648 | 100 | Plus |
| CG5946-PA | 313 | CG5946-PA | 1..313 | 4..316 | 1616 | 98.7 | Plus |
| CG5946-PD | 316 | CG5946-PD | 1..316 | 1..316 | 1513 | 90.5 | Plus |
| CG5946-PG | 330 | CG5946-PG | 1..330 | 1..316 | 1488 | 86.7 | Plus |
