BO27141.complete Sequence
1471 bp assembled on 2010-09-17
GenBank Submission: KX794716
> BO27141.complete
GAAGTTATCAGTCGACATGACGGCCGAGACAAACAAAGGACCCGTTCTGG
GAATGAGGCATGTCCAGGCGCTACTGATCTTCCTCAATATAACTACCGTA
TTCATAGGCCGCCTAAATGTGGGCGTGTCTGTGGTGGCAATGACCAATGC
GGAAACCACGAACCCGAACTTTCCGGAATACGATTGGACGGAGGCAGAGA
AGTCGTATATATTCTCCAGTTTCTTTTGGGGCTACATCTTGACCCAATTT
ATAGGTGGCTATCTCTGCAAGCGCTTTGGAGTCAAGAGTGTAATGTTTTG
GGGTGTCTTTGTATCTGGTGTCTGCAGTGCATTGACCCCGCTCTTCATCG
GTTTTGGCGGATGGCAGGCCTACTGCGGAATTCGCGTGGTTATGGGCTTG
GCACAGGGACTAGTTTTTCCCTGTATTCATCACCATTTGGCCAAATGGTC
ACCTCCGGCGGAACGAAATCGGTTGGGAGCTCTTAGTCACACTGGGATGG
AGTGCGGCAATGTAAGTGCCATGTTCTTGAGCGGAATGATAGCCAAAAGT
GCCATTGGTTGGCCAGGAATATCATATGTCTCCGCAGGATTAGCCTTCGC
CTGGTGTGCCATTTGGTTCGTTTTTGCCGCTGACAATGCAGTGGAATCTC
GTTACATAACCCAGGAAGAACTCCACTATATCGAATCGTCTCTGAAGCAC
AATGAGGACTATCACAAGACCGTAATTCCCGTACCATGGATGGCGATTTG
GACCTCGGCACCATTTCTTGCTCTTACGCTGACGCGTTGTTGCGCGACCT
GGGGTCTGAGCACCCTCCAGGCCCAAATCCCAACTTATATGAACGGAGTT
CTGGATATGGACATGAAAAGCAATGCATTCTTTTCGGCATTACCATTTCT
GGCCATGTGGATTATGTCGTATGTGTACCTGATAATCGCCGATGTTCTGC
TCGCCGGAAACAGGCTGAGTTTAACGGCCCTCCGGAAGACCTTCAACTCG
TTGGCCTTCTGGATTCCTTGTGCCACTTTGATTGGAATCGGATTCCTGGA
TCAGGAGCAGAAGAACCTGGCAATTGCTTTGATGACCATCAGTGTCGGTG
TCAACAGTGGAGCAACAATCGGAAGCTCCTTGAACACCATAGATCTATCC
CCGAATCATGCGAGTATTCTAATGGGAATCTTGAATACGGCTGTTACTGT
AGTGCCTATAGTAACCCCTTTGATTGTTGGAGTTATTGTTCATGAAGACG
ATAACCGTGCTGAGTGGCAGATAGTGTTCATAATTGCGGCAGTACTTTTT
TTTGTCGGAAACTCGGTGTACCTATACTTTGGAACGGCTGTTTCACAACC
CTGGGATGCTGAAGACTACCTCACAGTAAAGGTGCCAGAGCTAGCTAAAG
TTCCAGCTATCCATGAAGCTGGTAAAGGTATTGATGACCTTCCACGAAGT
CCTGCAAGCTTTCTAGACCAT
BO27141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12490-RB | 1440 | CG12490-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
| CG30265-RB | 1458 | CG30265-PB | 1..1420 | 17..1436 | 4205 | 86.4 | Plus |
| CG30265-RA | 1458 | CG30265-PA | 1..1420 | 17..1436 | 4205 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12490-RB | 1647 | CG12490-RB | 54..1490 | 17..1453 | 7185 | 100 | Plus |
| CG30265-RB | 1622 | CG30265-RB | 58..1477 | 17..1436 | 4205 | 86.4 | Plus |
| CG30265-RA | 1771 | CG30265-RA | 207..1626 | 17..1436 | 4205 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22835185..22836260 | 175..1250 | 5380 | 100 | Plus |
| 2R | 25286936 | 2R | 22833119..22834194 | 175..1250 | 3550 | 88.7 | Plus |
| 2R | 25286936 | 2R | 22837915..22838971 | 175..1231 | 1850 | 78.3 | Plus |
| 2R | 25286936 | 2R | 22836341..22836544 | 1250..1453 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 22834990..22835129 | 37..176 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22837720..22837859 | 37..176 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22834252..22834435 | 1253..1436 | 620 | 89.1 | Plus |
| 2R | 25286936 | 2R | 5962262..5962368 | 945..839 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:43:34 has no hits.
BO27141.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:44 Download gff for
BO27141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RA | 1..1401 | 53..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:35 Download gff for
BO27141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1490 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:01 Download gff for
BO27141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1490 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:01 Download gff for
BO27141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22834700..22834721 | 17..38 | 100 | -> | Plus |
| 2R | 22834992..22835128 | 39..175 | 100 | -> | Plus |
| 2R | 22835186..22836259 | 176..1249 | 100 | -> | Plus |
| 2R | 22836341..22836544 | 1250..1455 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:35 Download gff for
BO27141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18722515..18722651 | 39..175 | 100 | -> | Plus |
| arm_2R | 18722223..18722244 | 17..38 | 100 | -> | Plus |
| arm_2R | 18722709..18723782 | 176..1249 | 100 | -> | Plus |
| arm_2R | 18723864..18724067 | 1250..1455 | 99 | | Plus |
BO27141.pep Sequence
Translation from 16 to 1471
> BO27141.pep
MTAETNKGPVLGMRHVQALLIFLNITTVFIGRLNVGVSVVAMTNAETTNP
NFPEYDWTEAEKSYIFSSFFWGYILTQFIGGYLCKRFGVKSVMFWGVFVS
GVCSALTPLFIGFGGWQAYCGIRVVMGLAQGLVFPCIHHHLAKWSPPAER
NRLGALSHTGMECGNVSAMFLSGMIAKSAIGWPGISYVSAGLAFAWCAIW
FVFAADNAVESRYITQEELHYIESSLKHNEDYHKTVIPVPWMAIWTSAPF
LALTLTRCCATWGLSTLQAQIPTYMNGVLDMDMKSNAFFSALPFLAMWIM
SYVYLIIADVLLAGNRLSLTALRKTFNSLAFWIPCATLIGIGFLDQEQKN
LAIALMTISVGVNSGATIGSSLNTIDLSPNHASILMGILNTAVTVVPIVT
PLIVGVIVHEDDNRAEWQIVFIIAAVLFFVGNSVYLYFGTAVSQPWDAED
YLTVKVPELAKVPAIHEAGKGIDDLPRSPASFLDH
BO27141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12490-PB | 479 | CG12490-PB | 1..479 | 1..479 | 2522 | 100 | Plus |
| CG30265-PB | 485 | CG30265-PB | 1..473 | 1..473 | 2237 | 87.9 | Plus |
| CG30265-PA | 485 | CG30265-PA | 1..473 | 1..473 | 2237 | 87.9 | Plus |
| CG9825-PA | 485 | CG9825-PA | 1..485 | 1..485 | 2065 | 79.2 | Plus |
| CG9826-PC | 495 | CG9826-PC | 1..460 | 1..460 | 1625 | 64.3 | Plus |
