Clone BO27144 Report

Search the DGRC for BO27144

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG10749-RA
Protein status:BO27144.pep: Imported from assembly
Sequenced Size:1075

Clone Sequence Records

BO27144.complete Sequence

1075 bp assembled on 2010-09-20

GenBank Submission: KX796447

> BO27144.complete
GAAGTTATCAGTCGACATGTTTTTGGCCTCTAGATTGTTAAGCCATGTTG
GCAACTTGCCTCCCAAGGTCCAGCAGCTTGGATATATCAACCGAGGTCTC
AAGGTCGCCGTTGTGGGATCGGTGGGTGGAATCGGTCAGCCGCTGTCCCT
TCTTCTCAAGCATAATCCGCAAATCTCGACCCTGTCTCTGTACGACATTA
AGAATACAACCGGTGTAGGAGTAGACTTATCTCATATCAACACCCGTGCT
TCAGTGTGCCCATTCGAGGGTAAGAATGGTTTAAAAAAAGCTATGGATAA
GGCTGATATAGTGGTGATACCGGCGGGTTTGCCACGTAAGCCCGGAATGA
AGCGCGAAGATTTGGTGGACGTGAATGCCAGCGTTGCCTGCGAAGTGGCT
TTTGCGGCTAGCGAAGTTTGTCCCGGTGCCATGCTTGCCTTCATCACGAA
CCCCATCAACGTGATAGTACCCATCGTGGCCACGATCCTTAAAGCAAAGG
GTACATACGATCCGAATCGACTATTTGGTGTCACCACTCTGGATGTGGTA
CGAGCCCAGACCTTTGTAGCGGACATTCTCAACGTTGATCCCCAGAAAGT
GAATATACCCGTAATCGGTGGCCATACAGGTCGGACCATCCTGCCCATAC
TGTCGCAGTGTGATCCCCCCTTTAAGGGTACCGATAAGGAGCGCGAAGCG
TTGATCCAACGCATCCAAAATGCGGGCACAGAAGTGGTTAATGCCAAGGA
TGGCCTGGGCTCGGCCACCCTATCGATGGCCTTTGCAGCCACTCAGTTTG
TAAGCTCGTTGATAAAGGGTATCAAGGGTTCAAAGGACGAGTGCATTGTG
GAATGTGCCTATGTGGAGTCTGATGTCACGGAGGCCCAGTTCTTCGCCAC
CCCACTGATACTGGGACCCCAGGGTGTCAAGGAAAACACAGGATTGCCCG
ATTTGGACGATGAGGAAAGGAAGGCTCTAAATGGTATGCTACCCATTTTG
AAGGAGAGTATCGCAAAGGGCATCAAATTGGGCGAGGGTATGATATGCAG
TTGTGCAGCAAGCTTTCTAGACCAT

BO27144.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10749-RA 1044 CG10749-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10749-RA 1177 CG10749-RA 53..1093 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12972526..12973566 17..1057 5205 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:40:37 has no hits.

BO27144.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:16 Download gff for BO27144.complete
Subject Subject Range Query Range Percent Splice Strand
CG10749-RA 61..1093 25..1059 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:40 Download gff for BO27144.complete
Subject Subject Range Query Range Percent Splice Strand
CG10749-RA 61..1093 25..1059 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:33 Download gff for BO27144.complete
Subject Subject Range Query Range Percent Splice Strand
CG10749-RA 61..1093 25..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:33 Download gff for BO27144.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12972534..12973566 25..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:40 Download gff for BO27144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12965634..12966666 25..1059 99   Plus

BO27144.pep Sequence

Translation from 16 to 1075

> BO27144.pep
MFLASRLLSHVGNLPPKVQQLGYINRGLKVAVVGSVGGIGQPLSLLLKHN
PQISTLSLYDIKNTTGVGVDLSHINTRASVCPFEGKNGLKKAMDKADIVV
IPAGLPRKPGMKREDLVDVNASVACEVAFAASEVCPGAMLAFITNPINVI
VPIVATILKAKGTYDPNRLFGVTTLDVVRAQTFVADILNVDPQKVNIPVI
GGHTGRTILPILSQCDPPFKGTDKEREALIQRIQNAGTEVVNAKDGLGSA
TLSMAFAATQFVSSLIKGIKGSKDECIVECAYVESDVTEAQFFATPLILG
PQGVKENTGLPDLDDEERKALNGMLPILKESIAKGIKLGEGMICSCAASF
LDH

BO27144.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10749-PA 347 CG10749-PA 1..347 1..347 1762 100 Plus
Mdh2-PA 336 CG7998-PA 26..331 29..336 898 57.5 Plus
CG10748-PA 349 CG10748-PA 17..333 22..340 831 52 Plus