BO27156.complete Sequence
1117 bp assembled on 2010-09-22
GenBank Submission: KX799628
> BO27156.complete
GAAGTTATCAGTCGACATGACAAATATGAAGCAACGGCTGCGCAACTTGT
TTCGCCGGAACAAAATGCGCGCACGGCCCACTACAGTGGCCAGTGATGCG
AATAAGGAGCAGCCGGAGCCACCTAAGCAGGAGCCAAGCAAACAGAAGAA
AACTAAGCAGGATGCCTCCAAGCAGGAGCCACCTAAGCAGGAAGAGCCCG
AAAAGCCACCCAAGGAAGTCGAAGTGGAGATAATACCCTCGCCAACGTCA
GAGGGCGAAATGCCCACCTACTTCCATGTGGGCGCCTTGGCGAAGGATTG
CCTCATCAATGGCTTCAAGATCGGCGCATGGCAGATGCACTGCAGCACGC
GAACCGATAATGACTTCTATCTGAACACCTTCGGCGAGGGCTATCCCACC
ATGAAGAACGTATTTGGCGGCATGGAGGTGTTCAAGGAAGTGGGCAACTA
CAGCACGTCCCTCGGCTGGTTCACCAACAATGATCTTCTCTCGGAGATCG
CTGTGCGCGGCATGAACTTTGGCAGTCGATTGTATGGACTGCTCAAGTCA
ACAATTGGCACAAAAGACGAAGTGAGCTTTCAAACGAAGCTGAAGTGCGG
GTTGGAGCGCGATCCCGTGAAGGTGGAACTGGTGGTGCCTCTGTACAACG
AACCCCTATTTCTGGGCTATGTCCTGGTGGCGCCTGTAGAGAATTGGGTG
CTGGGATATCGAACGGAGTACAACTTTGACGAAAAGGGATTCGATAAGCA
CGCCCTGTGCCTGGGCTACAATAATGGGAGGACCGAAGTGGGTCTAAAAC
TCGAGAATTTCGAGGATCTTCGAGGCTCGATCTTCCAAAGGATCGGCGAA
GCCTGGGCCTTTGCCATCAAGACGAATCTCTACAGTTCGGAAAATGTGAA
ACAGTTTGCCATTGGGGTTCAGTACGACTTCCAGAATGGCACCATGGTGA
AGGCCAAGCTGCGGGAGGACTCCAGAATGGGGTTCGTCTACCAATCAAAG
ATTGGGGAGAACATCGATGTTGGCTATCACTTGGCCTTCGATGGAGTAGA
TCCCATTGGTGGAGCCCATAGGATTGGCGTTTCCTGGGGTTTTCACTGTG
CAAGCTTTCTAGACCAT
BO27156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17140-RB | 1086 | CG17140-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| CG17140-RA | 1086 | CG17140-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17139-RA | 2398 | CG17139-RA | 1246..2328 | 17..1099 | 5415 | 100 | Plus |
| CG17140-RB | 1263 | CG17140-RB | 111..1193 | 17..1099 | 5415 | 100 | Plus |
| CG17140-RA | 2398 | CG17140-RA | 1246..2328 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10843739..10844292 | 570..17 | 2770 | 100 | Minus |
| 2L | 23513712 | 2L | 10843084..10843381 | 1099..802 | 1490 | 100 | Minus |
| 2L | 23513712 | 2L | 10843440..10843670 | 801..571 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:41:10 has no hits.
BO27156.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:18 Download gff for
BO27156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17139-RA | 1246..2328 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for
BO27156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17140-RA | 1246..2328 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:43 Download gff for
BO27156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17140-RA | 1246..2328 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:43 Download gff for
BO27156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10843081..10843381 | 802..1101 | 99 | <- | Minus |
| 2L | 10843440..10843670 | 571..801 | 100 | <- | Minus |
| 2L | 10843739..10844292 | 17..570 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for
BO27156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10843081..10843381 | 802..1101 | 99 | <- | Minus |
| arm_2L | 10843440..10843670 | 571..801 | 100 | <- | Minus |
| arm_2L | 10843739..10844292 | 17..570 | 100 | | Minus |
BO27156.pep Sequence
Translation from 16 to 1117
> BO27156.pep
MTNMKQRLRNLFRRNKMRARPTTVASDANKEQPEPPKQEPSKQKKTKQDA
SKQEPPKQEEPEKPPKEVEVEIIPSPTSEGEMPTYFHVGALAKDCLINGF
KIGAWQMHCSTRTDNDFYLNTFGEGYPTMKNVFGGMEVFKEVGNYSTSLG
WFTNNDLLSEIAVRGMNFGSRLYGLLKSTIGTKDEVSFQTKLKCGLERDP
VKVELVVPLYNEPLFLGYVLVAPVENWVLGYRTEYNFDEKGFDKHALCLG
YNNGRTEVGLKLENFEDLRGSIFQRIGEAWAFAIKTNLYSSENVKQFAIG
VQYDFQNGTMVKAKLREDSRMGFVYQSKIGENIDVGYHLAFDGVDPIGGA
HRIGVSWGFHCASFLDH
BO27156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17140-PB | 361 | CG17140-PB | 1..361 | 1..361 | 1930 | 100 | Plus |
| CG17140-PA | 361 | CG17140-PA | 1..361 | 1..361 | 1930 | 100 | Plus |
| CG17139-PA | 340 | CG17139-PA | 3..339 | 4..360 | 916 | 47.6 | Plus |
| porin-PE | 282 | CG6647-PE | 4..276 | 83..355 | 283 | 26.2 | Plus |
| porin-PD | 282 | CG6647-PD | 4..276 | 83..355 | 283 | 26.2 | Plus |
