BO27160.complete Sequence
2047 bp assembled on 2010-10-15
GenBank Submission: KX797283
> BO27160.complete
GAAGTTATCAGTCGACATGGAGAACTTTGGTATCGCACATGCCCTGCTCC
AGCTACTGCTGCTCCATCTGGTGGGAAGTGGTCGAGGTCACCTGCTAACT
GGTCAACCGGCCATTGACCTGCGCATCCAGGCACGGGAGCAGCTGATCTC
GCAGTCCAATGACAGCGCCTATGTCCAGCGACTGATGCGTCTGTCCAAGT
CCGCCGAAATGCGCAGCTATATGCAGCAGGACGCGGATGCCTGCGAAAAC
TTCTACGACTACAGCTGCGGAAATTGGCCCCAGATCAATCCGGCCAACGA
TGCCTATCCCCGGGAGACGAACTTCGTGCAGCTGCTGCTCAAGGCCTATA
GCCACAAGCAGCAGCGTCTAATGGAGCAGCCGGCGAACGTGGAAACGGAT
GAGGTGGCCGTGCTCCGACTGAAGGAGTTCTATGCCAGTTGCCTGCTCTT
TCGACAGGTACCGGAGGATCTCTACAGACGTCAGTTGCAGGAAATTGTGG
CTGATTTCGGACGCATGCCCGTCCTAAGTCTCCCGGGTCAGGAGTGGCCA
GCCGAGGAGTTCGATTGGCTGGACACAGTGGCGCGAATAAAGCGGCAGTA
CGGCTTTGACATCCTTTTGCTCTTTCAGCAGTCGGCGGATCGCATATACG
TGGGACAGCCGAAGCAGATTCTTCCGGAGGCCAACAGAAAGGCCGTGGCA
GAAGATATAGCCAATCATTTGGAACGTCACTTGGGTGTGGATCCCAAAGT
GGCCGTAACAACGGCAAGGGAAATTACAGAGTTTGAGCAAAAGATTGCCG
CCATTATGGTGGATCGTCGAGTTGGAGTGATGTCCAAATTGTACACTCCA
AGTGACGCGGACTACGTTGATGTCTCAAAACTCACCCAGTTCGTGGAAAC
TGTCCTTGACCGGGAGTTGTTGGCCAACGAGTCCCTATATCAGCATGTTC
CTGATTATCTTATGAAAATAGATGAGCTGGTGACGGAGACACCACCACAC
GTACTGGCTAACTATGTCTTCAATGAGCTTTTAAAGCACTTCTACTACGA
GCGAGCGGAATCCGTTGTGGAGCAGTGCGTCAGTCGGGTCAGGGATCTCT
TTGGCGAGCTCCTTGACCACATGTTGTTCGAGCAGTATGAAGATGAAGGT
ACCCTGAAGGATATATATGTAGTCTGGCAGCAGTTACAGCGCAGCTTTAG
AGGTGTGTTACAAAACTCTTCAGCAAATTGGTTGGTTCCGGAGACGAGGG
AACAACTACTAGAGCAGTTGAATACAACCAGTCTGGTGATCAATGGATAT
GCCGAAGTCAATTTCACGCAGCGATATGAGGAGCTGCACCTGAAACCTAG
AGATTATCTTCACAATCTGAGGACCATACTTAACCATCAGAGTTTGAGGG
TCAAGGTGAAGACTCAGACATCGGTCACCTATGATCCTGTGGGAAAGAGA
GTCCTGCTACCAGTTGCTCTGCTCCAACCGAACTTCCTGTGGTCCCGCTA
CTATCCAAAAGCAGTGCGGTATGGCAGTCTGGGCACCTTGCTGGCCCAGC
AGTTGGCACACAGCTTGGAAGATGCATCCAAGTGGGATGCCAAGTCCTTT
GCTGAGTACTCCAAAAGGAAGTCCTGCTTCAAGGAGCAGTACGGTAGACT
GCGGCTCAATGGACATTACTTGCCGGAGAGCGATCTGCAGGCGGAGAACA
TAGCCGACAATCTGGCCATTCAGGTGGCCTACCATGCCTACCGAAGGCTT
CTGGCGGAACTGGACCCATCCTTCTTGGGCTCCGAGTCCTTGCCACAACT
CAACCTTGGCTCCCGAAGACTGTTCTTCCTCAGCTTTGCCCAGTTATGGT
GCAATGATGCCAATGAACAGTTCCGGGACAAGCAATCCCTGTTTTTGGGC
ACTCCCAATGCCCTCCGCGTGCTGGGAGCACTATCGAACTTTAGAGCCTT
TGGACGGGACTTTAACTGCGGGACCGCTAGCAGGATGACCTCTCCCCAGA
AGTGTCAGCTCTTCGCCGTTAACCTGGATGCAAGCTTTCTAGACCAT
BO27160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14523-RA | 2016 | CG14523-PA | 1..2013 | 17..2029 | 10065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14523-RA | 2099 | CG14523-RA | 22..2039 | 12..2029 | 10075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28878084..28880101 | 2029..12 | 10075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:15 has no hits.
BO27160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:12 Download gff for
BO27160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14523-RA | 146..2158 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:56 Download gff for
BO27160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14523-RA | 27..2039 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:35 Download gff for
BO27160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14523-RA | 27..2039 | 17..2031 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:35 Download gff for
BO27160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28878082..28880096 | 17..2031 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:56 Download gff for
BO27160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24703804..24705818 | 17..2031 | 99 | | Minus |
BO27160.pep Sequence
Translation from 16 to 2047
> BO27160.pep
MENFGIAHALLQLLLLHLVGSGRGHLLTGQPAIDLRIQAREQLISQSNDS
AYVQRLMRLSKSAEMRSYMQQDADACENFYDYSCGNWPQINPANDAYPRE
TNFVQLLLKAYSHKQQRLMEQPANVETDEVAVLRLKEFYASCLLFRQVPE
DLYRRQLQEIVADFGRMPVLSLPGQEWPAEEFDWLDTVARIKRQYGFDIL
LLFQQSADRIYVGQPKQILPEANRKAVAEDIANHLERHLGVDPKVAVTTA
REITEFEQKIAAIMVDRRVGVMSKLYTPSDADYVDVSKLTQFVETVLDRE
LLANESLYQHVPDYLMKIDELVTETPPHVLANYVFNELLKHFYYERAESV
VEQCVSRVRDLFGELLDHMLFEQYEDEGTLKDIYVVWQQLQRSFRGVLQN
SSANWLVPETREQLLEQLNTTSLVINGYAEVNFTQRYEELHLKPRDYLHN
LRTILNHQSLRVKVKTQTSVTYDPVGKRVLLPVALLQPNFLWSRYYPKAV
RYGSLGTLLAQQLAHSLEDASKWDAKSFAEYSKRKSCFKEQYGRLRLNGH
YLPESDLQAENIADNLAIQVAYHAYRRLLAELDPSFLGSESLPQLNLGSR
RLFFLSFAQLWCNDANEQFRDKQSLFLGTPNALRVLGALSNFRAFGRDFN
CGTASRMTSPQKCQLFAVNLDASFLDH
BO27160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14523-PA | 671 | CG14523-PA | 1..671 | 1..671 | 3472 | 100 | Plus |
| CG14526-PC | 707 | CG14526-PC | 7..707 | 8..666 | 911 | 31.3 | Plus |
| CG14527-PA | 700 | CG14527-PA | 30..700 | 47..666 | 870 | 31.2 | Plus |
| CG14528-PA | 682 | CG14528-PA | 35..682 | 50..666 | 779 | 29.9 | Plus |
| CG14529-PA | 681 | CG14529-PA | 36..681 | 54..666 | 742 | 29.9 | Plus |
