BO27163.complete Sequence
2314 bp assembled on 2010-10-15
GenBank Submission: KX795054
> BO27163.complete
GAAGTTATCAGTCGACATGGAGGATGAGGACTCAGATTACTTGCCGCTGC
CGAACACCAATAGCTTGAGTATTCCGAATGATCCGGTCATGCTGGCCGTG
TACGAGCTTTACAAGCCGCCCCTGACCGCCAATCGGAATTTACTCTCGGA
GCGTAATCGGGAATTCTTCGCAGAGGCGTTTAACGATGCCGACCAAGTGC
CCACTTTGGCGGATCTCTGCGTCCGACAGATGGCTAAACGTGGAAATGCC
AACGTGCCCGACGAGGTGCTTCAAGATCCGCGAAAGATGCGCATCCACTA
CGATTCACTCGATGTGGATCTGCCACTGCGTGAGTGCTACTGCGTAGAGG
ATGCGAGCTACTGGAGGCGGGTGGTCCTAGCTAAGAGTTCCGAGACATGC
CTTGCACTGAAGGGGTTGCAGGATTACGACTGGCGCGGCAAGGGACTGAG
CCTGAAGTACATGGAGCTGGTGGAGGCCTGTCCGGCCGCCCTTTGGCCAG
AGAAAGAGATGACCGAACTAGCCGAGCTAATAAAGGATCATGTTCGCTGC
ATGGACATTCGGCACCTGCAGCCGCTGTCGGAGTATGCCTTTCGGAAAAC
AAAACGTGAGGAAGACGACTCGGAACCGGAAATAACATCCGAGGAGTCTG
GTGGCATGGAAATCTCCAGTGATGAGCCAATGACACCAGAAGACGTCGAT
GAGGAGGGGGAGGAAGAAGAGGAGGGGGCGGGTTCAATCGCCTCTGACCA
GAAAAGGGCAATTGGATTCAATACAAAATTTACGCTGAATGCTTCCGACG
ATGAAGATGACTCCGGCAACGAGCGTCGCAAACGTCGACATGAACGCAAC
GTCGCCCGCCAACGATTGCGTGATCTGAAGGCTGCCAGGGAGGCGGAGCA
TGAGGAGCGCAGGCGACGACGGTCCGAGATGCGGAAGCCCAAGGAACCAG
AGCCACGAAAGAAAAAGAAGCGAAGGCAGCGTATAAAGGGCACCTTTGAT
ATCCGCGTGGAGCCTGAACCAGACGATGGCGATGACAAGGTTTTGGACAA
ACGCAACAAGCAAAGATATCTGACGCATCTACAACAATTAAAATATCCGG
AGGACGACTGCGTTCACATCGATCTTAGCTTTGTGCGCCACTTTGTCAAT
CTGGTATCGCTGAACCTGGAGTTTCTGGGTCCGGCTTTGGGTAGAAAGTA
CCACAAGCGGAACGTGCTCTTTTCGATCAAGGACATGGTTCGCCTGGCTA
GAGGTTTAGTGGCACTGCAGCAGCTGCAGATCTTCCGGCTTCGAAACAGC
AGACTTAATAGCTTTAAGCTATACACCGTGTGCCGGGCTCTGCGCCTATT
GCCTTTGCTGGAGGTAGTGGACTTTGGGTACAACCAGATGACTGACGACT
GTGGCCCCGAGTTGGGAATTCTGCTGGAGCGGCCGCAAATGCTAAAGATC
CTTGAGCTGGAGTACAACCGACTGGACACGCGGGCAATGTCGGCTATCGG
AGAGGCACTGCAGCGACCGAACCTCTCCAGACTGGAGTATCTGGGATTGG
CCCACAATAAGTTGAGCGGCGACTCCCTGTCCATTTTGTGCAACGGTATC
AAGGGCACCGAGCACGTGGAGGAGCTTAATGTGTCCGGCATCGAGGCGAA
TCCTCGGACAATTGTGGACCAACTAGGCGATCTTCTGCGTCATCACGATC
CACTTCGTCGGCTGATAATGGTGGCCATTCCTTTAGGTGCTAAGCTAGGT
ACAAGACTTATATGCGCCCTCACCGCCAACATGAAGGTCACCCATTTTGA
CTGTCGCGACTGCGACTTGGACGAGCAAGAAGAGTTCGAGGCGAACGTGG
CAGTCAGGCGAAACATTTTCTTGGGCGAAAACGGCTTTGTCACCGATACA
CAGCGCTTCCCCAGCATTGGCGATGTTTTGGAGTTTGCCAAGACGCTGAA
GCATCCGATGGTGCAAAAGGTAGAGAACGACATGGCGAGGAAGAAGGAGT
GCTTGCCGTTCTGCCCGACCCCATCGCCAAGTGTCCAAAGCCTCGCGGCA
CAGTCACTAGTAGCGGAGGAGTCGGAGTACGATATTTGGCAGATGCTTGG
CATCACAAAAAAAGTGACCAAGGACGCACCTCCGGTCGAAGAGCTAGTGA
AAAAAGTCAGTTCAGTGTCGGTGATCAAGGAACCTTTTGTCTACAAACCC
AACGAATTCAACATAGACGAGTTCCGAGCTCACGTTTTTCTGCCGGGGAC
GAGAAACAGGCACTCCTACTTCATGAAAGAAAGGCGAATGGATTACGCAA
GCTTTCTAGACCAT
BO27163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18171-RA | 2283 | CG18171-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18171-RA | 2538 | CG18171-RA | 129..2408 | 17..2296 | 11400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1720746..1723025 | 2296..17 | 11400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:50 has no hits.
BO27163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:10 Download gff for
BO27163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18171-RA | 129..2408 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:50 Download gff for
BO27163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18171-RA | 129..2408 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:27 Download gff for
BO27163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18171-RA | 129..2408 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:27 Download gff for
BO27163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1720744..1723025 | 17..2298 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:50 Download gff for
BO27163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1720744..1723025 | 17..2298 | 99 | | Minus |
BO27163.pep Sequence
Translation from 16 to 2314
> BO27163.pep
MEDEDSDYLPLPNTNSLSIPNDPVMLAVYELYKPPLTANRNLLSERNREF
FAEAFNDADQVPTLADLCVRQMAKRGNANVPDEVLQDPRKMRIHYDSLDV
DLPLRECYCVEDASYWRRVVLAKSSETCLALKGLQDYDWRGKGLSLKYME
LVEACPAALWPEKEMTELAELIKDHVRCMDIRHLQPLSEYAFRKTKREED
DSEPEITSEESGGMEISSDEPMTPEDVDEEGEEEEEGAGSIASDQKRAIG
FNTKFTLNASDDEDDSGNERRKRRHERNVARQRLRDLKAAREAEHEERRR
RRSEMRKPKEPEPRKKKKRRQRIKGTFDIRVEPEPDDGDDKVLDKRNKQR
YLTHLQQLKYPEDDCVHIDLSFVRHFVNLVSLNLEFLGPALGRKYHKRNV
LFSIKDMVRLARGLVALQQLQIFRLRNSRLNSFKLYTVCRALRLLPLLEV
VDFGYNQMTDDCGPELGILLERPQMLKILELEYNRLDTRAMSAIGEALQR
PNLSRLEYLGLAHNKLSGDSLSILCNGIKGTEHVEELNVSGIEANPRTIV
DQLGDLLRHHDPLRRLIMVAIPLGAKLGTRLICALTANMKVTHFDCRDCD
LDEQEEFEANVAVRRNIFLGENGFVTDTQRFPSIGDVLEFAKTLKHPMVQ
KVENDMARKKECLPFCPTPSPSVQSLAAQSLVAEESEYDIWQMLGITKKV
TKDAPPVEELVKKVSSVSVIKEPFVYKPNEFNIDEFRAHVFLPGTRNRHS
YFMKERRMDYASFLDH
BO27163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18171-PA | 760 | CG18171-PA | 1..760 | 1..760 | 3957 | 100 | Plus |
| CG15580-PA | 743 | CG15580-PA | 1..741 | 1..756 | 1362 | 41.5 | Plus |
