BO27164.complete Sequence
823 bp assembled on 2010-09-22
GenBank Submission: KX794884
> BO27164.complete
GAAGTTATCAGTCGACATGGATTTCAACAAGCGACAGAACATGGAGGAGG
TGGTGCGCATCGGAGGCAAAGGATCTATGCGCCGCAAGCATAAGAGAATC
CCATCAGTAGCTGCGGTCGATGAGAAGCGCGTGCAGGCGACATTGGCCAA
GATACCGTTAAAGAATATCAGCGGAATCCATGAGTTGACCATCGAGTTCA
CCGATTCCAGTGAGGTTGTGGTAGTCATGCCCAAGGTTCAGGGCATCTCT
GCCAATGGTTTGTTAGTTGTTAATGGCGATTTCGTGCGCAAATCGTCAAC
AGCTGGCCCATCGAAAATGGCCAAAGCAGCCAAGGCACCCAAGGCACCCA
AGGCACCCAAGGCACCCAAGACACCCATGGCACCCATGGCACCCATGGCA
CCCATGGCACCCATGACACCCAAGCCGGAAGCTTTTTCCGTCAAAAAGCC
AGAATCAGAGGAAACCATTAAGGTGGTGGCCAAGAAGCCCAAGAAGCTGC
GCAATCGTGTTCGTCCTCGCAACAAGAAGGTCCAAATGATGCTCTCTAAA
AACAATGAGGAAGCAGCCATGGCTGGCGGGGATTCGGAGCCGAAGCTTAG
CAATGGTAAATCAATTTTGATCTCCTCTGAAGATGGTAGCGATCCGGATA
ATGAGAAGGTGCCATCGGATGAGTCTGATGTGGATCGGACCGTCGTCTGC
GACAAAGATTCGCTGGGAAGTTTCGGCGATGATTCCGACGGCAAGGAGGA
CGATGACAGTAAGGAGTCGATTTACCTATCTTTCTACTCCGATGGCTATG
ATTCCGCAAGCTTTCTAGACCAT
BO27164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-RA | 792 | CG18313-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 302..731 | 375..807 | 1710 | 93.5 | Plus |
| betaNACtes6-RA | 789 | CG32598-PA | 302..731 | 375..807 | 1665 | 92.8 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 1..351 | 17..370 | 850 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-RA | 1012 | CG18313-RA | 103..891 | 17..805 | 3945 | 100 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 419..848 | 375..807 | 1710 | 93.5 | Plus |
| betaNACtes6-RA | 967 | CG32598-RA | 419..848 | 375..807 | 1665 | 92.8 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 118..468 | 17..370 | 850 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14380507..14381295 | 17..805 | 3945 | 100 | Plus |
| X | 23542271 | X | 14379278..14379707 | 375..807 | 1710 | 93.5 | Plus |
| X | 23542271 | X | 14316249..14316678 | 807..375 | 1665 | 92.8 | Minus |
| X | 23542271 | X | 14171744..14172169 | 803..375 | 1555 | 91.4 | Minus |
| X | 23542271 | X | 14314760..14315019 | 807..548 | 1120 | 95.4 | Minus |
| X | 23542271 | X | 14172120..14172470 | 370..17 | 955 | 85.3 | Minus |
| X | 23542271 | X | 14378977..14379327 | 17..370 | 850 | 83.3 | Plus |
| X | 23542271 | X | 14316629..14316979 | 370..17 | 850 | 83.3 | Minus |
| X | 23542271 | X | 14315113..14315412 | 316..17 | 675 | 81.7 | Minus |
| X | 23542271 | X | 15576746..15576921 | 567..744 | 415 | 84.2 | Plus |
| X | 23542271 | X | 14315018..14315112 | 492..398 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:43:05 has no hits.
BO27164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:19 Download gff for
BO27164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18313-RA | 103..891 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:57 Download gff for
BO27164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..891 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:21 Download gff for
BO27164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..891 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:21 Download gff for
BO27164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14380507..14381295 | 17..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:57 Download gff for
BO27164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14274540..14275328 | 17..807 | 99 | | Plus |
BO27164.pep Sequence
Translation from 16 to 823
> BO27164.pep
MDFNKRQNMEEVVRIGGKGSMRRKHKRIPSVAAVDEKRVQATLAKIPLKN
ISGIHELTIEFTDSSEVVVVMPKVQGISANGLLVVNGDFVRKSSTAGPSK
MAKAAKAPKAPKAPKAPKTPMAPMAPMAPMAPMTPKPEAFSVKKPESEET
IKVVAKKPKKLRNRVRPRNKKVQMMLSKNNEEAAMAGGDSEPKLSNGKSI
LISSEDGSDPDNEKVPSDESDVDRTVVCDKDSLGSFGDDSDGKEDDDSKE
SIYLSFYSDGYDSASFLDH
BO27164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-PA | 263 | CG18313-PA | 1..263 | 1..263 | 1333 | 100 | Plus |
| betaNACtes3-PA | 262 | CG32601-PA | 1..244 | 1..264 | 949 | 76.5 | Plus |
| betaNACtes1-PA | 261 | CG13402-PA | 1..241 | 1..261 | 932 | 75.1 | Plus |
| betaNACtes6-PA | 262 | CG32598-PA | 1..244 | 1..264 | 925 | 75.4 | Plus |
| betaNACtes2-PA | 197 | CG18157-PA | 1..197 | 1..243 | 666 | 60.9 | Plus |
