BO27165.complete Sequence
2239 bp assembled on 2010-10-15
GenBank Submission: KX795969
> BO27165.complete
GAAGTTATCAGTCGACATGGCCCAGCTGAAGAATGTGGGCCAAGCAGGTC
AACAGGCCGTTCTTGTTGTTGGCCCCATGCTTGCCTCGGCCATGTTGCTC
ATGGGGCTGATATTCGCGCTGCTGGGGATCAAGTTCTTCGGCTTCCGGCG
GCGACTGACTTTCGAGCGATCGCAGGTGCAGCGGCAACAGCAGAATCAGC
AGCAGCAACAACCGCCGCCACGTTACGCAGCTTTCGAATCGCAGGTTAAC
GGCACCGATACTGCTGTCCATGGAGTGTTCCGACGTCGCAATCTCGAGGA
ATTCGAAAGCCCATGGCCATCGGCATCAGCAACGACAGGGAACAACTTCA
TCAGTGGCAGTGTTCCAAATCTGCAACTATATGGCGCCAGCCCAAGACAG
CCCAAATCCACGGAAGAATCACCAGTTTCCTATCGAGAGAAGTCGGAGGC
ACAACGACTGGAGGTGCACAGTGAGCACTATGAATTCTACACCGCTCCAC
CTACCCGCAAGCCACCTTCTCCGCCACTACAATCAGAAGTACTAGCTGAA
ACTGCCTCGGTAGTTTCACTACCTAAGATACTAGAATCCATCCCTGCTCC
ACCTCCCAGGACCATGAGAGGAGCTGCTGCATCCAAGCCTTCAGGACCTG
CAGCTTCTGTCGACACAGCTCCCGAGCCTCCTAGCGAACTGGGAATGCCC
AACTTCGATCACTTTGCTGAAAAGTACGAGTTGTTTAGTGTAAAACCAAC
GACTGCGCCCACTAGACCAACACAGTTGCGAAGCAAGAACAGCGGCCGCT
ATGTGAAGTTCGAGCCAGTTGATGATGTGCCGGAAATTCTCACTCCTGAG
GATCCCGTTCCGGAGTTACTAACTCCAGATGATGGTTTGGGAGGAGCGAT
GTCAGTTACCGCTGTGGTTCATAGGGGAGCCATACCCAAGGAAGAAACGG
AATCGAAAGATGAACCGCAAGCACCAAATGATACCGATCCCTTTGGGGGA
CCCAGCAATACAGACTCAGCTTTTGTCGTGGAAATCATAGCAGGAAGTCC
CGAAGCGGAAGCGACTCCTAGTATACAGCCCACCTTTCAAAATGGCCTAT
TTGAAAACCTTGAATTACCACAAGGTGAGCACGACAGTGATTTCGTGCGA
ATACGTTCGTCATTCGTGATGAACGAAGCCGACATCCTGGATTTGGATCA
GCTGCAGCTGCCGGCGGCCAGTAGTCCACCAGGATTTGGCAAGAGCATCG
ACGAGGACTGGGAGAACTTTGCCAACCTAGACGCCGTGGTGGATGTGCCA
GAGCCCAATTGGTCTCTGCATCCGAATAGCTTAGAGCAAGTGCCCACTGT
GGAGGCGACGCTTAATGAGGCTGCCGTCAGACTGGACGATGTGGAACAGG
TGGAGGGTCTGTTCCATCAACTAGAGCTTATAGAGCCGAGAATGGATATA
TTCGAGCCTGAGCCGCCAGCTCCCATTATAAATCCACCGCCATACGATCC
TGGTCTGCCCTATCTACCAGATTACGAATCCCTGATGCGGCTAGATATTG
CAAAGAACGGTCAGAAATTGCCCGACTACACCGAGGTAATGCAACAAAGG
TCCAAGACATCCAATTATGTAATGAGCATTGAGGATCTATACGCGGATCT
GGATGTTAATGAGGTGGAGATAAACGGTTCTCAAGTCAACCAGAGCAATG
AAATCCCCAATTTCGAGGCCTTGTGCCAGGAAATGGCTGTGGTGGTGCCA
TCAGAGCGTCAAGCTCCTCAGCCCGCGCCCAGGTCTACCAAATCAGCCAG
ATCCCTCAATGTTCGTGGTAGTACTTCTCCCCTTGCGTGCTATCAACCTG
AAGAGCTTCCCAGCTCCAGTTCCAGTGATACCGATGGGGAGGAGGGAGCA
CGATCAGCTCCAGAACCTGCCAAACGTGATCCGAAATCGCTCAAAGTCCG
CTTTGATGTGGATAATCTGCAGTACTACCAGTCCGCTGAGGTGGTAACAT
CAGGTGATGAGTCTGAAGAGGATGAGCCGATGCAACAGCCAACTCCCACG
CAGCGTTCGATCATTTTTGAACCGAGTAATACTGGAGTGCCCAGCCTATT
CGGATCCCAGGTCTCCCAGGAAGACAGTGATGACGATAATGGCTTTGGAC
GAGCTATCAGCCAACATCGCTCCATGACTGCGACACTTAGGACAAACGCT
GTTAGAAACAATACCGATGACGCAAGCTTTCTAGACCAT
BO27165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14131-RA | 2208 | CG14131-PA | 1..2205 | 17..2221 | 11025 | 100 | Plus |
| CG14131-RB | 2205 | CG14131-PB | 1..2202 | 17..2221 | 10945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14131-RA | 2532 | CG14131-RA | 147..2354 | 14..2221 | 11040 | 100 | Plus |
| CG14131-RB | 2529 | CG14131-RB | 147..2351 | 14..2221 | 10960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11778422..11780307 | 336..2221 | 9430 | 100 | Plus |
| 3L | 28110227 | 3L | 11777304..11777507 | 43..246 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 11778215..11778312 | 242..339 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 172..231 | 162 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2662 | 165..225 | 161 | 73.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1151 | 165..212 | 150 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6821 | 178..221 | 148 | 81.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6851 | 172..218 | 145 | 78.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1148 | 172..221 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6881..6923 | 173..215 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2424 | 165..212 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1575 | 179..215 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2373 | 172..215 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6770 | 178..212 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6791 | 178..212 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1551 | 174..212 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2472 | 178..212 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2514 | 178..212 | 121 | 82.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1056 | 179..263 | 119 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2826 | 165..218 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2352 | 183..231 | 116 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6824 | 172..212 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2812..2868 | 165..221 | 114 | 66.7 | Plus |
BO27165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:10 Download gff for
BO27165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 1..2205 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:48 Download gff for
BO27165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 150..2354 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:21 Download gff for
BO27165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 150..2354 | 17..2223 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:21 Download gff for
BO27165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11777222..11777249 | 17..44 | 100 | -> | Plus |
| 3L | 11777306..11777505 | 45..244 | 100 | -> | Plus |
| 3L | 11778218..11778311 | 245..338 | 100 | -> | Plus |
| 3L | 11778425..11780307 | 339..2223 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:48 Download gff for
BO27165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11770322..11770349 | 17..44 | 100 | -> | Plus |
| arm_3L | 11770406..11770605 | 45..244 | 100 | -> | Plus |
| arm_3L | 11771318..11771411 | 245..338 | 100 | -> | Plus |
| arm_3L | 11771525..11773407 | 339..2223 | 99 | | Plus |
BO27165.pep Sequence
Translation from 16 to 2239
> BO27165.pep
MAQLKNVGQAGQQAVLVVGPMLASAMLLMGLIFALLGIKFFGFRRRLTFE
RSQVQRQQQNQQQQQPPPRYAAFESQVNGTDTAVHGVFRRRNLEEFESPW
PSASATTGNNFISGSVPNLQLYGASPRQPKSTEESPVSYREKSEAQRLEV
HSEHYEFYTAPPTRKPPSPPLQSEVLAETASVVSLPKILESIPAPPPRTM
RGAAASKPSGPAASVDTAPEPPSELGMPNFDHFAEKYELFSVKPTTAPTR
PTQLRSKNSGRYVKFEPVDDVPEILTPEDPVPELLTPDDGLGGAMSVTAV
VHRGAIPKEETESKDEPQAPNDTDPFGGPSNTDSAFVVEIIAGSPEAEAT
PSIQPTFQNGLFENLELPQGEHDSDFVRIRSSFVMNEADILDLDQLQLPA
ASSPPGFGKSIDEDWENFANLDAVVDVPEPNWSLHPNSLEQVPTVEATLN
EAAVRLDDVEQVEGLFHQLELIEPRMDIFEPEPPAPIINPPPYDPGLPYL
PDYESLMRLDIAKNGQKLPDYTEVMQQRSKTSNYVMSIEDLYADLDVNEV
EINGSQVNQSNEIPNFEALCQEMAVVVPSERQAPQPAPRSTKSARSLNVR
GSTSPLACYQPEELPSSSSSDTDGEEGARSAPEPAKRDPKSLKVRFDVDN
LQYYQSAEVVTSGDESEEDEPMQQPTPTQRSIIFEPSNTGVPSLFGSQVS
QEDSDDDNGFGRAISQHRSMTATLRTNAVRNNTDDASFLDH
BO27165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14131-PA | 735 | CG14131-PA | 1..735 | 1..735 | 3809 | 100 | Plus |
| CG14131-PB | 734 | CG14131-PB | 1..734 | 1..735 | 3793 | 99.9 | Plus |
