BO27171.complete Sequence
2566 bp assembled on 2010-10-15
GenBank Submission: KX799926
> BO27171.complete
GAAGTTATCAGTCGACATGACGGAATCGGCTAACTTTCTATTCGACTTGG
TCATCACCAATCTGAATATTTTTGGCGTAACGATTGACGAACCCGCCAAA
CTCCTGGTGGAAACCAAGGTTGCCGGAAAATCAGTGAAGGTAACGTCCAG
CCGAATCAATGTCGACCAGTTTGTGGCCGGCAGGGAGTTTGAGCTCCCAA
TGGAAGCATCGACATTGCGTCAAAGTCTGGAGGAGAAGGGTTTGACTTTG
GCGGGTGTTTACCAGGGATCAACTCTTGGCAAGGCCACGGGGAACTTCCC
TGTGGAGTTTCTTGACAAGATCAGCCCCACGATGAACGATCTGGTGCACG
AAGATACACTCGATTTGGTTCGTCGAGTTGATGTAGTTGGAACGGTGAGC
GTTCTAATCCGCTTGACCGTAAAGTGCGAGGAGCACCCAGAGCAGAAGCC
TTCAAGGCAAAGTCTTTCCCGAACCAGCAAATCATCGATGATACTACCGA
AGAAAGAGAAAAGCGGACGAGTCAGTTGTGCTAGCCAGGGCCCGACCTTC
AATCCTCAGGATGTGATGTTTCTCATCGGCGATCCTGATCCTTTACTTCG
AATTCCCTCGGAGCCGTGTTCTGAACTTCTATCCGAAATAGGAGATGAAC
GCCTGAAGCTGGACTTGCAGCGCTACAAAAGCTTGGAAAATCGTCGAGCA
ATCTTTCCAGATGATGACCGCTGTCCCAAGCAAAAACCCTCATTTATGCA
ACTTAAAAAGCTCACCGAGGAGTATTCTAATATCATTGACTCTGTGACCA
AGAAGGTCAAAGAAATGGAACCGCAATCGAGCTCGTTGGTTCCTACGGAG
CCACCTTCCGATGCGAATGTCATAACTCCATTTTACACACCGCGGTCTCT
AAGTCTTGCTCCCGTGAAATCTGGCATACCTGTTTCTGTTAGATCCGACT
TATTACATGGCGTGAAACCTATACGGTTCTGTCCTGTCTGCTTGTGCTCC
ATGTCGTGGATGCCAAAATATGCACCATGCCCTCAATGCAATACTAAAGC
AGTTCCCATACTCCAAGGACATCCGATCGAGAATATTACGGCAGAAGAAA
TTTTGGCTGAACAACTAGTAAAACCAAAAGCACCGCCCGGAGTCGAGGAC
TTTTGTGAGCCACCATGCGAAAAGGTGCGCCGGAAGATCTGGAACGATAC
CGAGTGCCCACCATGCCGTTGTACATGCTCTAAGGGTAATACCTGCCCCC
ACTGCCGAATCCGCAAGATGTGCGATGACATTTTTACCGCCAAGAGTCCA
CCAAAACCTCCCCGCCGAATTCCGAAGCCCCGGTCAAGTGAGGATTTCTG
TGTGGTCATGGAATCTGAGGGGGAAGATGATCTTCCCTACCTGGCGAAGG
TATTTTCCGAGCTAAAGAATCTGTACCATATCCACGACACCAAGAAGCTT
TCAGCTATTAAGGAACGCTGCGCATCTCAGTCCTTGTTCACTATCCGCAG
CAGGCGATCCATCAAGGAGCTGACCAAATCGCTATACCCAGGAGACAAAA
TACTTGACGGAAGAAGCCATCATCCAAAGGCTGGCCACAAAAACTGCATT
TCGTCCTCAAGCATTGTGTCTCGTCGCCATGGTTGGAACTGGACAAAAAG
TTGCGAGGCACGGAAGAATGGCTGGCGGCCAGGTGCCATCCTACGATCCT
CTGGCCATGTGATGCGTCACTTCCTGATGCGAAGTAGAGATCCGAATATG
TGCGGCAAGGTAACAGCTGATTACGAGGAACAGAAACGATTTGGCCATCC
CGTGCTCAATATTTGCAAGCGAAATGGTAATATATTCGTAACCCTTCGTC
CACTGCCCACTTTGGGTATGAAACAGAAACCCATAACGTTCCGGATCGTC
AAGAGCGATATGGCGGTGGCACTGCGCCAGATCAAGCGTGCTCTCAAGGA
TCAGGGCTTCGAGAAGTGCAAGTGCCACCAGTCCCTGATGATGTGCACCT
GTCGCGATGCCTTGGATAAATTTCACCTGAATAAGGCTCTCAAGAAAGAG
TGCCAGAAGCGTTTTATAGAGCCATGTCCCGACCACTTGGTGCTTACCGA
CACAAGTGAGAGCGATTTGGAGTTCGATCTGGATGTGACTCCGCCGGCGG
GAACTCGTAGACCGAAGCGCAAAGCCCTTAGGAACGTGGTGAATCATAGC
ACCCAGACTGCAATGAAGGAGCCACCAGTTATACCGCCTCCATATCCAGT
AGCCCACAATCACTTCTATAGGGCCTACGATTGCGCAGCAGGAGATCGGT
ATATGGGCACAGCCTTCGGCGATAATATAGAGACCGTTTTCGAGGATGGA
GTCTTTGGATACCGGGGTGGTGGCCAGCATGGAAAGCCCGTAATCTGGCG
ACACCCGAAGGTGTGGGGCAAGAAGGCCCAGGCACCACTCCCGATTGGAA
CCGCTAGGAACGCCATCGATCCTTACCGGTATACCAAAAATGTTTGGAAA
GAACTGCCGCGAAAGATAATACAAAAAATGAGAGCAAAATCAAGGAAAGC
AAGCTTTCTAGACCAT
BO27171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31533-RA | 2535 | CG31533-PA | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| CG31327-RA | 2586 | CG31327-PA | 1867..2421 | 1832..2386 | 885 | 77.3 | Plus |
| CG31327-RA | 2586 | CG31327-PA | 543..758 | 538..753 | 330 | 76.9 | Plus |
| CG14355-RA | 3075 | CG14355-PA | 1936..2070 | 1862..1996 | 240 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31533-RA | 2704 | CG31533-RA | 141..2672 | 17..2548 | 12660 | 100 | Plus |
| CG31327-RA | 2719 | CG31327-RA | 1963..2517 | 1832..2386 | 885 | 77.3 | Plus |
| CG31327-RA | 2719 | CG31327-RA | 639..854 | 538..753 | 330 | 76.9 | Plus |
| CG14355-RA | 3292 | CG14355-RA | 2077..2211 | 1862..1996 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14154760..14157291 | 2548..17 | 12660 | 100 | Minus |
| 3R | 32079331 | 3R | 14157762..14158316 | 2386..1832 | 885 | 77.3 | Minus |
| 3R | 32079331 | 3R | 14159425..14159640 | 753..538 | 330 | 76.9 | Minus |
| 3R | 32079331 | 3R | 14149589..14149723 | 1996..1862 | 240 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:55 has no hits.
BO27171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:11 Download gff for
BO27171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 1..2532 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:52 Download gff for
BO27171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 141..2672 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:29 Download gff for
BO27171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 141..2672 | 17..2550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:29 Download gff for
BO27171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14154758..14157291 | 17..2550 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:52 Download gff for
BO27171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9980480..9983013 | 17..2550 | 99 | | Minus |
BO27171.pep Sequence
Translation from 16 to 2566
> BO27171.pep
MTESANFLFDLVITNLNIFGVTIDEPAKLLVETKVAGKSVKVTSSRINVD
QFVAGREFELPMEASTLRQSLEEKGLTLAGVYQGSTLGKATGNFPVEFLD
KISPTMNDLVHEDTLDLVRRVDVVGTVSVLIRLTVKCEEHPEQKPSRQSL
SRTSKSSMILPKKEKSGRVSCASQGPTFNPQDVMFLIGDPDPLLRIPSEP
CSELLSEIGDERLKLDLQRYKSLENRRAIFPDDDRCPKQKPSFMQLKKLT
EEYSNIIDSVTKKVKEMEPQSSSLVPTEPPSDANVITPFYTPRSLSLAPV
KSGIPVSVRSDLLHGVKPIRFCPVCLCSMSWMPKYAPCPQCNTKAVPILQ
GHPIENITAEEILAEQLVKPKAPPGVEDFCEPPCEKVRRKIWNDTECPPC
RCTCSKGNTCPHCRIRKMCDDIFTAKSPPKPPRRIPKPRSSEDFCVVMES
EGEDDLPYLAKVFSELKNLYHIHDTKKLSAIKERCASQSLFTIRSRRSIK
ELTKSLYPGDKILDGRSHHPKAGHKNCISSSSIVSRRHGWNWTKSCEARK
NGWRPGAILRSSGHVMRHFLMRSRDPNMCGKVTADYEEQKRFGHPVLNIC
KRNGNIFVTLRPLPTLGMKQKPITFRIVKSDMAVALRQIKRALKDQGFEK
CKCHQSLMMCTCRDALDKFHLNKALKKECQKRFIEPCPDHLVLTDTSESD
LEFDLDVTPPAGTRRPKRKALRNVVNHSTQTAMKEPPVIPPPYPVAHNHF
YRAYDCAAGDRYMGTAFGDNIETVFEDGVFGYRGGGQHGKPVIWRHPKVW
GKKAQAPLPIGTARNAIDPYRYTKNVWKELPRKIIQKMRAKSRKASFLDH
BO27171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31533-PA | 844 | CG31533-PA | 1..844 | 1..844 | 4507 | 100 | Plus |
| CG31327-PA | 861 | CG31327-PA | 8..855 | 3..838 | 2341 | 53.5 | Plus |
| CG14355-PA | 1024 | CG14355-PA | 36..835 | 7..801 | 1570 | 41.6 | Plus |
| CG31029-PA | 905 | CG31029-PA | 318..892 | 293..822 | 444 | 28.5 | Plus |
| Ppi1-PB | 742 | CG31025-PB | 120..595 | 320..761 | 424 | 29.9 | Plus |
