Clone BO27172 Report

Search the DGRC for BO27172

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG31867-RA
Protein status:BO27172.pep: Imported from assembly
Sequenced Size:658

Clone Sequence Records

BO27172.complete Sequence

658 bp assembled on 2010-08-18

GenBank Submission: KX794288

> BO27172.complete
GAAGTTATCAGTCGACATGCGTGATTATGCGTCCAACGTGATACGTTCGC
ATCGCTGCCTTTGCATTTTTACGGTGCTCCAATTGACCCTAATGCTCTCG
ATGCTGGAAGTTCAAATCCAAATTGACCAATCGCCGGAGCTCCAGCGACC
TATGACCCGAGTGCTTTTGGGGGCCCAACTAGGGGAGCTTGCCTGGAGTC
CATTGTTTTCCGGTTTTGCCATGGGTGCCATGTTCTACGGCTATGGTTTG
ATACACCTGCCCAGCAAAGGACCCCTCGGGTGCTTCTTCTCCAGGCTGCG
AACAGCTGGCTTGTCCGTGTGGCAACAATGTAGTCCCGTGATGCTTGTGC
CCTGGACCTTGAAGGTGGCCCAGGGCCTAAGCCTATTCCCTTGCCATTTG
TGGGAGTTTCTTGCGAATGAGGTGTGCTTAGAGACCGACAATTGTCTGCA
GCACGTCATTCTGGCTTTTGTACTGTGGATATACCTGCTAATCCTGGCCA
TCACTAGCTTGGTCTCTGTTGTGAGACTCAATCTTCAGATGCTGGCTGAC
AGGCACATTCACAGCAGAGACCACGAGCTGCGGGCCTATGTACGGGGAAT
CAATGAACTTCTCGGATTTGAGATGATAATGGTCACCGAAGCAAGCTTTC
TAGACCAT

BO27172.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31867-RB 627 CG31867-PB 1..624 17..640 3120 100 Plus
CG31867-RA 627 CG31867-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31867-RB 701 CG31867-RB 63..686 17..640 3120 100 Plus
CG31867-RA 839 CG31867-RA 63..686 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11144732..11145355 640..17 3120 100 Minus
Blast to na_te.dros performed 2014-11-28 02:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 5608..5636 617..645 109 86.2 Plus

BO27172.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:18 Download gff for BO27172.complete
Subject Subject Range Query Range Percent Splice Strand
CG31867-RA 63..686 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:24 Download gff for BO27172.complete
Subject Subject Range Query Range Percent Splice Strand
CG31867-RA 63..686 17..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:05 Download gff for BO27172.complete
Subject Subject Range Query Range Percent Splice Strand
CG31867-RA 63..686 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:05 Download gff for BO27172.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11144729..11145355 17..642 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:24 Download gff for BO27172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11144729..11145355 17..642 99   Minus

BO27172.pep Sequence

Translation from 16 to 658

> BO27172.pep
MRDYASNVIRSHRCLCIFTVLQLTLMLSMLEVQIQIDQSPELQRPMTRVL
LGAQLGELAWSPLFSGFAMGAMFYGYGLIHLPSKGPLGCFFSRLRTAGLS
VWQQCSPVMLVPWTLKVAQGLSLFPCHLWEFLANEVCLETDNCLQHVILA
FVLWIYLLILAITSLVSVVRLNLQMLADRHIHSRDHELRAYVRGINELLG
FEMIMVTEASFLDH

BO27172.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31867-PB 208 CG31867-PB 1..208 1..208 1086 100 Plus
CG31867-PA 208 CG31867-PA 1..208 1..208 1086 100 Plus