BO27173.complete Sequence
2794 bp assembled on 2010-10-15
GenBank Submission: KX799592
> BO27173.complete
GAAGTTATCAGTCGACATGAAAACGACAATCGTGGAGGAGAGGAGTGTGA
ATGAAACGATAGAAACAATAGCCACGAGCAGTGGCTCCGTCCAGGAGACA
ATCGAGATCGTGAATATCGATGGATCTGTAGCACCAAAGCATCGTCACCA
TCATCACCATCACAGACATCATCATCACCATGAAAGGCAGGAAAATGTTG
AAGTTGTGGCAACAGAGGAAGTGATTCTTGTGGAGAACGCACCGAAATCG
AGGAAGCATCACCACCACAAGCAGAGGACTTCTCCACCACCGCCCCTGCC
GCAAACCTCACCACCATTCCTCACCCCCACTGAAGAAGTGGGTTTCAATG
TGGTGTGGGAACCCCAGGCCTTTTGGAACCAGCCCTCACCCAATCCCTCC
ACTGATCTAGATCTCTCACAGGATAACGAGGTTGTCGATGCAGTGGAGAC
TATGGACACTACTTCAGCTTCCGATGAATTCACCACTGTTGTTTTTCAAT
CAGAGACAAAGGAGTCTATTAGGGAAACACAGAAGCACACTAGAGTGGTG
GAGGAGGAAATAATAATTGATCAATTGGACCCACCACCCTATGCACCACC
GCCACTTCAAGTGCAGACAGGATTCTTTCCAGTGGCTCAGCAGCCCCCAC
TTTCACCCATCGCAGAAGTGGTGCAAACAGATGTGGTGGCGGAATCGGTG
GAACCTCCACTACCGCCTACAGGTTATATTCCCAGAATAAATCTAAAGCC
AACGGAAACTATTGTCGAGAATGTCGAGGTCATCGTGCCCGCACAAATTC
AACAAGAGCCGGAGTTTATTCCGCAGCCGGGATTTGTGGCCAGAATTGTG
GAGAACATAGAAGTTGCCGCAGCATCTAAGTCATCACTGGTTTCACCTCA
AAAGAGTTATTATCCTCGGACAGGCATGGTGGAGACGATTGTGGAAGATA
TTGAAGTGGTAAAAGATGATGCTCCTGTTCAGAGTGGTTATATTCCCGGA
AATGTTGAAGTGGAATCGATTGTGGAAAATATAGATGCCGATTCTCCCTT
TCTTCTTCCACCCAATGGATTCGCTACTGATGAGTCCATTGTGGAAAACA
TTGAAGTCTCGACAGATGTAGATGATTCTCCATTTCTGCTTCCAGTTAAT
GGCTTTGACTCTGAACCAGTCTGTGTGGAATCGATTGTTGAAAATATAGA
AGTTACACCTTCTCAACCTGTCCTGCAAATATCAGATCAAAGTGTTGTTC
CTGCAGGCTTTGTCGAGTCTGCGGTGGAAGACATACAAGTCATAGAAACG
GAAGATCCCCCATTCCTACTGCCGACTGAAAATGACTTTACTGCTCAGGC
AGGCAATGTGGAATCCCTGATAGAAAATATAGAAGTAACTACGGAGGTGG
ATCTCACATTAAGACAATCAGAACAAATAGAAAATCTACCTCGATCTGGT
TTCGTGGAATCCATTGTAGAAAACATTGAAGTCACTCAAGAAGTAGATCC
CCCACAGCCTGCAGTTCCAAGTGATGTGGTCACTCAGAGTGGTCTAGTAG
AATCGATAGTGGAAAACATCGAAGTCACAGAAATAGTGGATATACAAGCT
CCGGCTCCACCACAAACTGGATTTGTGGAATCGGTAGTGGAACGTTTAGA
TGTCACGGAAGAAGTTGAACCTTCAGTGCGACCACCACTTCCACTTAGCT
ATCCTCCTCGTTCAGGGTTCGTAGAATCTATCGTGGAGAATATAGAAGTA
GAACAAGTTACTCCTTCTTATCAACCTCCCCAGCAAATTGTTCCTCAATC
AGGTTTTGTAGAAACATTTGTAGAGGATATTGAAATCAAAGAATCTGCGC
TACCGCCAATTCAAAATGGATATGCACCCCAAGCAGGAGTAGTTGAAACA
ATTGTCGAAGAAGTAGAAATCGTACCCGATCCTCCACGTCAATCCATAGT
GACAACCGATTATATGCCCCGTGCAAGTTTGGTTCAAGAACTGGTTGTGG
AATCACTTGAGGTCACACCAACATCATCGCCTCCACCCGAACAGTTTCCC
TTCATTTCCAGAGAGAGCCTAATCGTAGCTGATGATTACGTGGAGGTGGA
AGAAGTCACCCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGG
AAAGATTGAGTGAAGCCGAGTCTTATGTGGAGATTAATGAAGTTGCACCA
GTTAATACTCCACCCCAGAGGTCCGTTGAAGTGGGTTTCCTTCCCAGACC
CAGCTTAGCCGAAACGGCGGTGGTTGTGGAATCAGTGGAGGTAACTCCAA
CTCCAACACCGCCACCAAGCCCAGCACTGAAACTCAAAATACCACCGTCG
AATCAGATACCATCGGAGGTGATTGTGGACCAACCAGTTCCATCTTCAAC
TTTCAAGCCACCAGCGAAGCCACTTAACAATTTCATTCTAACTGATCTGG
TCATCGACGATCCTCCATTCGTAGAAGTGGTGGAAAGGGAAGTGGTTGTT
GAGTCCGCAAACAATGGCCAAGTCACTGAGGTTATCGAAGTCACGGAAGA
GATCATACAACCCGTCACACCCATCGGAACTGTTTTGGTGGGGGAGGTAT
CCGAGCAAAACAGCGACAAATTTGGCAAGCGATATTCCCTAAGTGCGACA
CTGGCTGATGGACAGCAGCAGGTGCAGGGAAAACCGGAAACGAATCAGTC
ACCACCGATCCAAAAACGAGATAAACCCACCGAACCACCGAAGCGTAGAT
GTTGCCAGTGTAAATGCATCATTTCCGCAAGCTTTCTAGACCAT
BO27173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30480-RB | 2763 | CG30480-PB | 1..2760 | 17..2776 | 13800 | 100 | Plus |
| CG30480-RA | 2763 | CG30480-PA | 1..2760 | 17..2776 | 13800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30480-RB | 3460 | CG30480-RB | 49..2808 | 17..2776 | 13800 | 100 | Plus |
| CG30480-RA | 2966 | CG30480-RA | 49..2808 | 17..2776 | 13800 | 100 | Plus |
| CG30479-RB | 3460 | CG30479-RB | 49..2808 | 17..2776 | 13800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14675329..14678088 | 2776..17 | 13800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:23 has no hits.
BO27173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:09 Download gff for
BO27173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30480-RA | 46..2805 | 17..2778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:45 Download gff for
BO27173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30480-RA | 49..2808 | 17..2778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:18 Download gff for
BO27173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30479-RB | 49..2808 | 17..2778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:18 Download gff for
BO27173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14675327..14678088 | 17..2778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:45 Download gff for
BO27173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10562832..10565593 | 17..2778 | 99 | | Minus |
BO27173.pep Sequence
Translation from 16 to 2794
> BO27173.pep
MKTTIVEERSVNETIETIATSSGSVQETIEIVNIDGSVAPKHRHHHHHHR
HHHHHERQENVEVVATEEVILVENAPKSRKHHHHKQRTSPPPPLPQTSPP
FLTPTEEVGFNVVWEPQAFWNQPSPNPSTDLDLSQDNEVVDAVETMDTTS
ASDEFTTVVFQSETKESIRETQKHTRVVEEEIIIDQLDPPPYAPPPLQVQ
TGFFPVAQQPPLSPIAEVVQTDVVAESVEPPLPPTGYIPRINLKPTETIV
ENVEVIVPAQIQQEPEFIPQPGFVARIVENIEVAAASKSSLVSPQKSYYP
RTGMVETIVEDIEVVKDDAPVQSGYIPGNVEVESIVENIDADSPFLLPPN
GFATDESIVENIEVSTDVDDSPFLLPVNGFDSEPVCVESIVENIEVTPSQ
PVLQISDQSVVPAGFVESAVEDIQVIETEDPPFLLPTENDFTAQAGNVES
LIENIEVTTEVDLTLRQSEQIENLPRSGFVESIVENIEVTQEVDPPQPAV
PSDVVTQSGLVESIVENIEVTEIVDIQAPAPPQTGFVESVVERLDVTEEV
EPSVRPPLPLSYPPRSGFVESIVENIEVEQVTPSYQPPQQIVPQSGFVET
FVEDIEIKESALPPIQNGYAPQAGVVETIVEEVEIVPDPPRQSIVTTDYM
PRASLVQELVVESLEVTPTSSPPPEQFPFISRESLIVADDYVEVEEVTPY
NTAPHSPIVEVERLSEAESYVEINEVAPVNTPPQRSVEVGFLPRPSLAET
AVVVESVEVTPTPTPPPSPALKLKIPPSNQIPSEVIVDQPVPSSTFKPPA
KPLNNFILTDLVIDDPPFVEVVEREVVVESANNGQVTEVIEVTEEIIQPV
TPIGTVLVGEVSEQNSDKFGKRYSLSATLADGQQQVQGKPETNQSPPIQK
RDKPTEPPKRRCCQCKCIISASFLDH
BO27173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30480-PB | 920 | CG30480-PB | 1..920 | 1..920 | 4716 | 100 | Plus |
| CG30480-PA | 920 | CG30480-PA | 1..920 | 1..920 | 4716 | 100 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 5881..6667 | 72..852 | 231 | 21.3 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6536..7315 | 76..852 | 231 | 22.5 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 5881..6667 | 72..852 | 231 | 21.3 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6536..7315 | 76..852 | 231 | 22.5 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 5774..6563 | 73..856 | 227 | 22.1 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 5989..6779 | 72..856 | 227 | 22.3 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 5774..6563 | 73..856 | 227 | 22.1 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 5989..6779 | 72..856 | 227 | 22.3 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6205..6991 | 72..852 | 225 | 22.2 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6205..6991 | 72..852 | 225 | 22.2 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6313..7099 | 72..852 | 220 | 22.8 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6313..7099 | 72..852 | 220 | 22.8 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6428..7207 | 76..852 | 218 | 22.6 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6428..7207 | 76..852 | 218 | 22.6 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6752..7532 | 76..856 | 212 | 22.4 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6752..7532 | 76..856 | 212 | 22.4 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 6644..7423 | 76..852 | 211 | 22.2 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 6644..7423 | 76..852 | 211 | 22.2 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 5240..5807 | 247..856 | 175 | 23.9 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 5240..5807 | 247..856 | 175 | 23.9 | Plus |
| Cpn-PB | 864 | CG4795-PB | 157..798 | 190..866 | 174 | 21.6 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 4818..5591 | 66..856 | 168 | 21.4 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 4818..5591 | 66..856 | 168 | 21.4 | Plus |
