Clone BO27179 Report

Search the DGRC for BO27179

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG9589-RA
Protein status:BO27179.pep: Imported from assembly
Sequenced Size:793

Clone Sequence Records

BO27179.complete Sequence

793 bp assembled on 2010-09-22

GenBank Submission: KX796184

> BO27179.complete
GAAGTTATCAGTCGACATGGGAGATCGCAACAAGCAGCCGGTTATTCTGC
TGAAGGTTCCGTCCTCCGATGATTTCTATGGTTCGGCGTTGCGCAGCCAT
AACCTGGATCCCATCTTCATTACTCCCTCGCATTTTGTGTTCAAGAATCT
GAAGCAATTGCAAGCCAAGTTGCATGAGCCGCACAAATATGCCGGGATTA
TATTTGCATCCCCGCGCTGTGTCCAAGCTGTAAACGAGGCACTAGGAAAG
ACACCACTTCCTAGTTGCTGGCGTGCGTTACACAATTATTCCCTAGGCAA
GAACACGCACAGCGCCGCCTGGATAACATTCCAGAATCTTCCGACTCTGG
GCGATCATGCCGTGAATGCAAACAATCTGTGCGATCTGATCGTGGAGACG
TTTGGACCCAAGAGGGATCTGCCACTGCTCATGCCCTGCGGCAATGGCGT
GGGTCAGACACTGCGCCTCCGTTTGGTCGCCCAGGGATTCCGGGTGGATG
CCTGCGAAGTGTACGAGAGTCGGTCGCATCCGGATTTCGTCAATCAGATG
CGGCACGCCCTCAAATTCAAGCGAATGGAAACGATTGTGTTCTTCGGACC
CTCCAGTGTCCGCAGCTCCTTGGAGTTCTTTGGGAACTACAACGTTTCGC
TTAAGGATCGCAAGCTGATAGCCGTGGGCAGTGGCACCAGGAAGGCAATG
GAGGAATCTGGAATTAAGGCGGACGGAGTCGTGAATGCTGCTGACGTCGA
CCGCCTGATAAATATCATCAAAACAGCAAGCTTTCTAGACCAT

BO27179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-RA 762 CG9589-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-RA 974 CG9589-RA 83..842 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15788603..15789362 16..775 3800 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:46:21 has no hits.

BO27179.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:27 Download gff for BO27179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..842 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:23 Download gff for BO27179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..842 17..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:30 Download gff for BO27179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 84..842 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:30 Download gff for BO27179.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15788604..15789362 17..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:23 Download gff for BO27179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11614326..11615084 17..777 99   Plus

BO27179.pep Sequence

Translation from 16 to 793

> BO27179.pep
MGDRNKQPVILLKVPSSDDFYGSALRSHNLDPIFITPSHFVFKNLKQLQA
KLHEPHKYAGIIFASPRCVQAVNEALGKTPLPSCWRALHNYSLGKNTHSA
AWITFQNLPTLGDHAVNANNLCDLIVETFGPKRDLPLLMPCGNGVGQTLR
LRLVAQGFRVDACEVYESRSHPDFVNQMRHALKFKRMETIVFFGPSSVRS
SLEFFGNYNVSLKDRKLIAVGSGTRKAMEESGIKADGVVNAADVDRLINI
IKTASFLDH

BO27179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-PA 253 CG9589-PA 1..253 1..253 1327 100 Plus
CG1885-PB 277 CG1885-PB 1..253 1..251 513 41.9 Plus
CG1885-PA 277 CG1885-PA 1..253 1..251 513 41.9 Plus