BO27180.complete Sequence
2218 bp assembled on 2010-10-15
GenBank Submission: KX795448
> BO27180.complete
GAAGTTATCAGTCGACATGGCGAAGAAGTTTAGTAACATAATATTCTATC
TGACCCTGATAATCATAGCCATCTGTGTGGCCTGTATCTGGATGTTCTCG
GGCTTCCGTCACGAATATGGCAAATTCAACATGATCCTGGTTGCCTTCTT
GGCCGTTACTTTACTTCAGATCCTAATCTTTACGCCCATTAAGTTCACAA
TTATGTCGCTGGATGCCGCCTTCTGGCCGGCCCACCAAGCACCGGAGACT
CCCGACGAGAATGCCAATGTGGACACGTTCATGGACAATCTCAGACTGCG
CCTCCGGACGCTGCGGAGTGAGCTGATGATCACGGAGAGGCATCGGAACG
AGAGGGTCAACCTGAAGTATCGCCTGATTACCGAGGAACTTTGGCTCACG
GGCAAGCTGTTCCTGGTTTACTTCTTCATGGCCTTGGCTTTCTTCGATGA
GTTGCTGTACTTTAACACAGAGGCCACGGAGTTACTGTTCCAATGTAATC
ATGGGGATGCGTTCGGACTATTGAGTGTGGGGGATGTGCCGGATATATAT
TTTTTTGTGGTGTCCTCGTTAGTGCTGGCCTTTACGGATGGCAAGAACAC
CAGTGGCGGAGCTCCTTGGATCCATGCGGAGGGCACTAGACTACTGGGCG
TGGTGAGACTGAGGCAGCTGAGGACAGAGAGCAACCGATTGGGTCTATCG
CTTCCTGTGTTCACTGAGCGGGACTTTTCGGAGAGCTGGACACTGCCCTA
CGAAAGGGTTCCCTATACGGACAAGTACTGGCCCATCTACACACCCTGGC
TGCCCAGTGTTTCTGTTGCTCGGGACAACCTACTTATGGGCATTAACCAC
GTGGGGCACATGTTCAACTATCCGGAATCGAAGGGCTACAAGGTACTGCT
CTCGGACACCCGCCACAAAAGCCTGAAAATTATTGATTACTTGATGAAGA
AAAACTGGCTGGATGCGAATACGACCGCTTTGTTCATGGATTTCAGCTTG
TACAACGCGGATGCCAACACCTTTACCGTGTGCACCTTGTGGGTGGAAAA
GTTCCCTTACCAGTATCCTGATGGCCACACGAGGATCGAGAGTCACACCT
TTGTGGAGCAACTGCGAGAGTTTACGAAGTTCGGAATGCTAATGGTGTTT
GTCTTTGTCGTCACGTGGCTGCAGTTCACCAAGGCGTTCTTCCTGAAGGT
CTGGTACGATCCTCGACAGTTGAAGACCCTGTGGGTCCAGGTGGATGCAA
TGATCGTGGCACTCAGCCTCGTTGTGGGGATGATCATGTCGGTGCGGGAT
AACTTGGTTCAAAAGATGATCAAGAGTGTTGAAATCGCCGTTGTGGTGGA
CTTTCTGGACTTTCGGGAGCCAGCCCAGCTCGCCTACCTTGAGGATGTGG
TCACGGGATTGGCCGTGGCCTTGGTCACTATGCGTTTGTGGAAAGTGTTG
CAGTTTTCCGCCACCTTCCAACTGTTCACCAAGACAATCGCTATGGCGTG
GGACGCGTTGCTCTGCACCTTCGTAATAACCGTGATTTTCATCATTGCAA
TTGGCATTGCGACGGTAACCATCAATGGCAACTATACCAGCAACTTCAGG
GACTTCCCCAAGGGCATTGTTACGGTCACCTGCTTTGCCTTTGGCTATAC
GAATTTGGTATACCCACCGGATATCTTTTACGGCGGAGAGTGGCTGGGCA
TCTTATTGTATACCATAATGGGATTCGTGGTCAAGTACATGCTGATCAAC
TTGATCGTTTCCATGATGAGGGATCAGATGGCCAGTGTCAAGGCGGATAG
GGATAAGAAAGTGAGGCAGCGCATAACATTCTGGCAATTCCTGCGCGTTG
AATATGCCCACTTTATTAACTACATCGTAAAAGTGTTCCACTGCCAAAAG
GGATATCAGCGAAAGAATCGCACAGTTGCACAGAACATCCAACGAAAACT
GAATAGTAATGAGCTTAAGCGACGAAAGACGAAGATTAGTTCAATTTATT
CCGAGACAATATATGTCATGCCGATAGACAAGGATCTGGAGCAGATGAAA
TATAGGGAGCGGATCGAGCGAACCTTCACTCTGGCCGCCATCCTCCACAC
CCAAATGGAGCTCATGGAGAGGCTTATGTTCGGTGACGAAGAGGGGAACC
TGCCAAGTTTGGACCAGGAAGACGAGCAGGTTCCAGAGACTGAGGAGGAC
GCAAGCTTTCTAGACCAT
BO27180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
brv1-RA | 2187 | CG9472-PA | 1..2184 | 17..2200 | 10920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
brv1-RA | 2673 | CG9472-RA | 30..2213 | 17..2200 | 10920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19484286..19486469 | 2200..17 | 10920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:18 has no hits.
BO27180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:08 Download gff for
BO27180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9472-RA | 1..2184 | 17..2202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:42 Download gff for
BO27180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
brv1-RA | 30..2213 | 17..2202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:16 Download gff for
BO27180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
brv1-RA | 30..2213 | 17..2202 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:16 Download gff for
BO27180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19484283..19486469 | 17..2202 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:42 Download gff for
BO27180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19477383..19479569 | 17..2202 | 99 | | Minus |
BO27180.pep Sequence
Translation from 16 to 2218
> BO27180.pep
MAKKFSNIIFYLTLIIIAICVACIWMFSGFRHEYGKFNMILVAFLAVTLL
QILIFTPIKFTIMSLDAAFWPAHQAPETPDENANVDTFMDNLRLRLRTLR
SELMITERHRNERVNLKYRLITEELWLTGKLFLVYFFMALAFFDELLYFN
TEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAP
WIHAEGTRLLGVVRLRQLRTESNRLGLSLPVFTERDFSESWTLPYERVPY
TDKYWPIYTPWLPSVSVARDNLLMGINHVGHMFNYPESKGYKVLLSDTRH
KSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQY
PDGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFLKVWYDPR
QLKTLWVQVDAMIVALSLVVGMIMSVRDNLVQKMIKSVEIAVVVDFLDFR
EPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLC
TFVITVIFIIAIGIATVTINGNYTSNFRDFPKGIVTVTCFAFGYTNLVYP
PDIFYGGEWLGILLYTIMGFVVKYMLINLIVSMMRDQMASVKADRDKKVR
QRITFWQFLRVEYAHFINYIVKVFHCQKGYQRKNRTVAQNIQRKLNSNEL
KRRKTKISSIYSETIYVMPIDKDLEQMKYRERIERTFTLAAILHTQMELM
ERLMFGDEEGNLPSLDQEDEQVPETEEDASFLDH
BO27180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
brv1-PA | 728 | CG9472-PA | 1..728 | 1..728 | 3795 | 100 | Plus |
brv3-PC | 750 | CG13762-PC | 4..728 | 3..727 | 1346 | 37.9 | Plus |
brv3-PB | 719 | CG13762-PB | 4..658 | 3..652 | 1315 | 39.8 | Plus |
brv2-PA | 736 | CG16793-PA | 14..730 | 10..724 | 1154 | 34.9 | Plus |
brv2-PB | 714 | CG16793-PB | 14..708 | 10..724 | 1087 | 33.5 | Plus |