Clone BO27180 Report

Search the DGRC for BO27180

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9472-RA
Protein status:BO27180.pep: Imported from assembly
Sequenced Size:2218

Clone Sequence Records

BO27180.complete Sequence

2218 bp assembled on 2010-10-15

GenBank Submission: KX795448

> BO27180.complete
GAAGTTATCAGTCGACATGGCGAAGAAGTTTAGTAACATAATATTCTATC
TGACCCTGATAATCATAGCCATCTGTGTGGCCTGTATCTGGATGTTCTCG
GGCTTCCGTCACGAATATGGCAAATTCAACATGATCCTGGTTGCCTTCTT
GGCCGTTACTTTACTTCAGATCCTAATCTTTACGCCCATTAAGTTCACAA
TTATGTCGCTGGATGCCGCCTTCTGGCCGGCCCACCAAGCACCGGAGACT
CCCGACGAGAATGCCAATGTGGACACGTTCATGGACAATCTCAGACTGCG
CCTCCGGACGCTGCGGAGTGAGCTGATGATCACGGAGAGGCATCGGAACG
AGAGGGTCAACCTGAAGTATCGCCTGATTACCGAGGAACTTTGGCTCACG
GGCAAGCTGTTCCTGGTTTACTTCTTCATGGCCTTGGCTTTCTTCGATGA
GTTGCTGTACTTTAACACAGAGGCCACGGAGTTACTGTTCCAATGTAATC
ATGGGGATGCGTTCGGACTATTGAGTGTGGGGGATGTGCCGGATATATAT
TTTTTTGTGGTGTCCTCGTTAGTGCTGGCCTTTACGGATGGCAAGAACAC
CAGTGGCGGAGCTCCTTGGATCCATGCGGAGGGCACTAGACTACTGGGCG
TGGTGAGACTGAGGCAGCTGAGGACAGAGAGCAACCGATTGGGTCTATCG
CTTCCTGTGTTCACTGAGCGGGACTTTTCGGAGAGCTGGACACTGCCCTA
CGAAAGGGTTCCCTATACGGACAAGTACTGGCCCATCTACACACCCTGGC
TGCCCAGTGTTTCTGTTGCTCGGGACAACCTACTTATGGGCATTAACCAC
GTGGGGCACATGTTCAACTATCCGGAATCGAAGGGCTACAAGGTACTGCT
CTCGGACACCCGCCACAAAAGCCTGAAAATTATTGATTACTTGATGAAGA
AAAACTGGCTGGATGCGAATACGACCGCTTTGTTCATGGATTTCAGCTTG
TACAACGCGGATGCCAACACCTTTACCGTGTGCACCTTGTGGGTGGAAAA
GTTCCCTTACCAGTATCCTGATGGCCACACGAGGATCGAGAGTCACACCT
TTGTGGAGCAACTGCGAGAGTTTACGAAGTTCGGAATGCTAATGGTGTTT
GTCTTTGTCGTCACGTGGCTGCAGTTCACCAAGGCGTTCTTCCTGAAGGT
CTGGTACGATCCTCGACAGTTGAAGACCCTGTGGGTCCAGGTGGATGCAA
TGATCGTGGCACTCAGCCTCGTTGTGGGGATGATCATGTCGGTGCGGGAT
AACTTGGTTCAAAAGATGATCAAGAGTGTTGAAATCGCCGTTGTGGTGGA
CTTTCTGGACTTTCGGGAGCCAGCCCAGCTCGCCTACCTTGAGGATGTGG
TCACGGGATTGGCCGTGGCCTTGGTCACTATGCGTTTGTGGAAAGTGTTG
CAGTTTTCCGCCACCTTCCAACTGTTCACCAAGACAATCGCTATGGCGTG
GGACGCGTTGCTCTGCACCTTCGTAATAACCGTGATTTTCATCATTGCAA
TTGGCATTGCGACGGTAACCATCAATGGCAACTATACCAGCAACTTCAGG
GACTTCCCCAAGGGCATTGTTACGGTCACCTGCTTTGCCTTTGGCTATAC
GAATTTGGTATACCCACCGGATATCTTTTACGGCGGAGAGTGGCTGGGCA
TCTTATTGTATACCATAATGGGATTCGTGGTCAAGTACATGCTGATCAAC
TTGATCGTTTCCATGATGAGGGATCAGATGGCCAGTGTCAAGGCGGATAG
GGATAAGAAAGTGAGGCAGCGCATAACATTCTGGCAATTCCTGCGCGTTG
AATATGCCCACTTTATTAACTACATCGTAAAAGTGTTCCACTGCCAAAAG
GGATATCAGCGAAAGAATCGCACAGTTGCACAGAACATCCAACGAAAACT
GAATAGTAATGAGCTTAAGCGACGAAAGACGAAGATTAGTTCAATTTATT
CCGAGACAATATATGTCATGCCGATAGACAAGGATCTGGAGCAGATGAAA
TATAGGGAGCGGATCGAGCGAACCTTCACTCTGGCCGCCATCCTCCACAC
CCAAATGGAGCTCATGGAGAGGCTTATGTTCGGTGACGAAGAGGGGAACC
TGCCAAGTTTGGACCAGGAAGACGAGCAGGTTCCAGAGACTGAGGAGGAC
GCAAGCTTTCTAGACCAT

BO27180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
brv1-RA 2187 CG9472-PA 1..2184 17..2200 10920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
brv1-RA 2673 CG9472-RA 30..2213 17..2200 10920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19484286..19486469 2200..17 10920 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:05:18 has no hits.

BO27180.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:08 Download gff for BO27180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9472-RA 1..2184 17..2202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:42 Download gff for BO27180.complete
Subject Subject Range Query Range Percent Splice Strand
brv1-RA 30..2213 17..2202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:16 Download gff for BO27180.complete
Subject Subject Range Query Range Percent Splice Strand
brv1-RA 30..2213 17..2202 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:16 Download gff for BO27180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19484283..19486469 17..2202 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:42 Download gff for BO27180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19477383..19479569 17..2202 99   Minus

BO27180.pep Sequence

Translation from 16 to 2218

> BO27180.pep
MAKKFSNIIFYLTLIIIAICVACIWMFSGFRHEYGKFNMILVAFLAVTLL
QILIFTPIKFTIMSLDAAFWPAHQAPETPDENANVDTFMDNLRLRLRTLR
SELMITERHRNERVNLKYRLITEELWLTGKLFLVYFFMALAFFDELLYFN
TEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAP
WIHAEGTRLLGVVRLRQLRTESNRLGLSLPVFTERDFSESWTLPYERVPY
TDKYWPIYTPWLPSVSVARDNLLMGINHVGHMFNYPESKGYKVLLSDTRH
KSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQY
PDGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFLKVWYDPR
QLKTLWVQVDAMIVALSLVVGMIMSVRDNLVQKMIKSVEIAVVVDFLDFR
EPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLC
TFVITVIFIIAIGIATVTINGNYTSNFRDFPKGIVTVTCFAFGYTNLVYP
PDIFYGGEWLGILLYTIMGFVVKYMLINLIVSMMRDQMASVKADRDKKVR
QRITFWQFLRVEYAHFINYIVKVFHCQKGYQRKNRTVAQNIQRKLNSNEL
KRRKTKISSIYSETIYVMPIDKDLEQMKYRERIERTFTLAAILHTQMELM
ERLMFGDEEGNLPSLDQEDEQVPETEEDASFLDH

BO27180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
brv1-PA 728 CG9472-PA 1..728 1..728 3795 100 Plus
brv3-PC 750 CG13762-PC 4..728 3..727 1346 37.9 Plus
brv3-PB 719 CG13762-PB 4..658 3..652 1315 39.8 Plus
brv2-PA 736 CG16793-PA 14..730 10..724 1154 34.9 Plus
brv2-PB 714 CG16793-PB 14..708 10..724 1087 33.5 Plus