BO27181.complete Sequence
613 bp assembled on 2012-04-24
GenBank Submission: KX797605
> BO27181.complete
GAAGTTATCAGTCGACATGTCCGCCCTGTCCGCGCCCACCACATGTGGCT
GCTCGCCTGTCCACTGGGCCATTGTCATTGTGCTCCTGTCAGTGGCGATT
GGACCGGGAGACGCCATGGCCCGTCCAGCGCGCAACACGCAGTTGTTGTT
CAGCGAGCTCTTGGGGGGCGGAAACGATGATAACAACTACTACGGCGACC
AGTTGAAGTACCAGCAACAGCAACAGCAACAGCAGGAACAGAAGCAGCAG
CGGGTGCCGGCTTTCGCCAGGAAGTGGCCCTCGCTGAGGGATCTGTTGCT
CACCGTGGACTACGATGACTTCGGGGTTACCCAGGAGAGCGAGGAGCAGG
TGGCGCCCAGTTCCCGCCTGCTGGCTCGACTGCACAGGCTCGGCGATAAT
GGAGGCGGCGAGGAGCTGCGGTACAACGTCGTTAACGAACTGACCAATAT
GCCCAGCAAGAAGGTGATGCCAGGACATCCCCTCAAGGATCACAACACCA
AGAAGAACGTTCAGTTTCGTAAACAATATATGTCGCCTTGCCACTTCAAG
ATCTGCAACATGGGACGCAAACGCAACGCTGGCTTCAATTCCTACGCAAG
CTTTCTAGACCAT
BO27181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMa-RB | 582 | CG13936-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
CNMa-RC | 582 | CG13936-PC | 1..579 | 17..595 | 2895 | 100 | Plus |
CNMa-RD | 570 | CG13936-PD | 1..567 | 17..595 | 2680 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMa-RB | 1261 | CG13936-RB | 604..1182 | 17..595 | 2895 | 100 | Plus |
CNMa-RC | 1900 | CG13936-RC | 886..1464 | 17..595 | 2895 | 100 | Plus |
CNMa-RD | 1606 | CG13936-RD | 604..1170 | 17..595 | 2680 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1851662..1851972 | 515..205 | 1555 | 100 | Minus |
3L | 28110227 | 3L | 1852052..1852240 | 205..17 | 945 | 100 | Minus |
3L | 28110227 | 3L | 1851351..1851418 | 595..528 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:03:21 has no hits.
BO27181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:08:09 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13936-RA | 1..567 | 17..597 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:54 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13936-RB | 604..1182 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:13 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13936-RC | 886..1464 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:53 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CNMa-RC | 886..1464 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:53 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1851664..1851971 | 206..513 | 100 | <- | Minus |
3L | 1852052..1852240 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:13 Download gff for
BO27181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1851664..1851971 | 206..513 | 100 | <- | Minus |
arm_3L | 1852052..1852240 | 17..205 | 100 | | Minus |
BO27181.pep Sequence
Translation from 16 to 613
> BO27181.pep
MSALSAPTTCGCSPVHWAIVIVLLSVAIGPGDAMARPARNTQLLFSELLG
GGNDDNNYYGDQLKYQQQQQQQQEQKQQRVPAFARKWPSLRDLLLTVDYD
DFGVTQESEEQVAPSSRLLARLHRLGDNGGGEELRYNVVNELTNMPSKKV
MPGHPLKDHNTKKNVQFRKQYMSPCHFKICNMGRKRNAGFNSYASFLDH
BO27181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMa-PB | 193 | CG13936-PB | 1..193 | 1..193 | 1029 | 100 | Plus |
CNMa-PC | 193 | CG13936-PC | 1..193 | 1..193 | 1029 | 100 | Plus |
CNMa-PD | 189 | CG13936-PD | 1..189 | 1..193 | 993 | 97.9 | Plus |