Clone BO27181 Report

Search the DGRC for BO27181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG13936-RB
Protein status:BO27181.pep: Imported from assembly
Sequenced Size:613

Clone Sequence Records

BO27181.complete Sequence

613 bp assembled on 2012-04-24

GenBank Submission: KX797605

> BO27181.complete
GAAGTTATCAGTCGACATGTCCGCCCTGTCCGCGCCCACCACATGTGGCT
GCTCGCCTGTCCACTGGGCCATTGTCATTGTGCTCCTGTCAGTGGCGATT
GGACCGGGAGACGCCATGGCCCGTCCAGCGCGCAACACGCAGTTGTTGTT
CAGCGAGCTCTTGGGGGGCGGAAACGATGATAACAACTACTACGGCGACC
AGTTGAAGTACCAGCAACAGCAACAGCAACAGCAGGAACAGAAGCAGCAG
CGGGTGCCGGCTTTCGCCAGGAAGTGGCCCTCGCTGAGGGATCTGTTGCT
CACCGTGGACTACGATGACTTCGGGGTTACCCAGGAGAGCGAGGAGCAGG
TGGCGCCCAGTTCCCGCCTGCTGGCTCGACTGCACAGGCTCGGCGATAAT
GGAGGCGGCGAGGAGCTGCGGTACAACGTCGTTAACGAACTGACCAATAT
GCCCAGCAAGAAGGTGATGCCAGGACATCCCCTCAAGGATCACAACACCA
AGAAGAACGTTCAGTTTCGTAAACAATATATGTCGCCTTGCCACTTCAAG
ATCTGCAACATGGGACGCAAACGCAACGCTGGCTTCAATTCCTACGCAAG
CTTTCTAGACCAT

BO27181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CNMa-RB 582 CG13936-PB 1..579 17..595 2895 100 Plus
CNMa-RC 582 CG13936-PC 1..579 17..595 2895 100 Plus
CNMa-RD 570 CG13936-PD 1..567 17..595 2680 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CNMa-RB 1261 CG13936-RB 604..1182 17..595 2895 100 Plus
CNMa-RC 1900 CG13936-RC 886..1464 17..595 2895 100 Plus
CNMa-RD 1606 CG13936-RD 604..1170 17..595 2680 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1851662..1851972 515..205 1555 100 Minus
3L 28110227 3L 1852052..1852240 205..17 945 100 Minus
3L 28110227 3L 1851351..1851418 595..528 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:03:21 has no hits.

BO27181.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:08:09 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RA 1..567 17..597 97   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:54 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RB 604..1182 17..597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:13 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RC 886..1464 17..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:53 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
CNMa-RC 886..1464 17..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:53 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1851664..1851971 206..513 100 <- Minus
3L 1852052..1852240 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:13 Download gff for BO27181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1851664..1851971 206..513 100 <- Minus
arm_3L 1852052..1852240 17..205 100   Minus

BO27181.pep Sequence

Translation from 16 to 613

> BO27181.pep
MSALSAPTTCGCSPVHWAIVIVLLSVAIGPGDAMARPARNTQLLFSELLG
GGNDDNNYYGDQLKYQQQQQQQQEQKQQRVPAFARKWPSLRDLLLTVDYD
DFGVTQESEEQVAPSSRLLARLHRLGDNGGGEELRYNVVNELTNMPSKKV
MPGHPLKDHNTKKNVQFRKQYMSPCHFKICNMGRKRNAGFNSYASFLDH

BO27181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CNMa-PB 193 CG13936-PB 1..193 1..193 1029 100 Plus
CNMa-PC 193 CG13936-PC 1..193 1..193 1029 100 Plus
CNMa-PD 189 CG13936-PD 1..189 1..193 993 97.9 Plus