Clone BO27182 Report

Search the DGRC for BO27182

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:82
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO27182.pep: Imported from assembly
Sequenced Size:832

Clone Sequence Records

BO27182.complete Sequence

832 bp assembled on 2010-09-22

> BO27182.complete
GAAGTTATCAGTCGACATGCGCATGCTTTTTATGATTTTCACAATAGCCG
AGCGAAGTTTCAAGATTCTAGAACTACCCACCACACCAACGCTTCTGCTG
CGCCGCCAGTCCCACAACTACGGCTACGACTACATCAGCCCCACGCACAT
CGAACTCAGCCGGGAAGCAACTCGCCTGGTAATTCGCCGTCTGCAGCGCA
CCGTTCTCCGCCTGATCCGTGACCCGGACTTCATCATGTCTGCCGAGGCG
AATCCCGAGATGGATAAGGAGCACCACGAGTCCCCATTCGCAGCGAACCG
CAAGGCCGGTGCCAGCGGCGCCGGCAAACAGGACTCGAACTGCCGCACCT
GCAACGATTTCAAGTCGTGGTCCAAGCAGCAACGCCTCATCTCCAACGTG
CAGAGCGCCAAGGTGAAGCACATGGCCGCCGCCGAAAAGCTGACCGTCAA
CGCCGCCGAAGATCCGCTGCCCCGCGACGACTGCCCGCTGGACAAGGTGA
GGCTGGGAATTTCCACCTGGGGACTGCTCCACACCATGGCCGCCTTTTAC
TCGGACAACCCCACGGACACCGAGAAGCGCGACATGAAGACCTTTTTTGA
GGTTCTGTCGCGCCTTTACCCCTGCGAGTTTTGCGCCAAGGACTTTCGCA
CCGACCTGGACGTCAACCCCATCAATGTGAACTCCCAAAAGGAGCTAGCA
CTGTGGCTGTGCAAGTTCCACAACCGAGTGAACGACAAACTGGGCAAACC
GCTCTTCGATTGCACCAAGGTGAACGAGAGGTGGCGCGACGGCTGGCTAG
ACGGCTCCTGCGACGCAAGCTTTCTAGACCAT

BO27182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 801 CG12534-PB 1..798 17..814 3990 100 Plus
Alr-RA 786 CG12534-PA 1..783 32..814 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 245..1043 16..814 3995 100 Plus
Alr-RA 1107 CG12534-RA 1..788 27..814 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19748912..19749312 16..416 2005 100 Plus
X 23542271 X 19749386..19749629 411..654 1220 100 Plus
X 23542271 X 19749689..19749848 655..814 800 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:46:29 has no hits.

BO27182.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:28 Download gff for BO27182.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 1..792 23..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:25 Download gff for BO27182.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 176..973 17..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:33 Download gff for BO27182.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 246..1043 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:33 Download gff for BO27182.complete
Subject Subject Range Query Range Percent Splice Strand
X 19749689..19749848 655..816 98   Plus
X 19748913..19749308 17..412 100 -> Plus
X 19749388..19749629 413..654 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:25 Download gff for BO27182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19642946..19643341 17..412 100 -> Plus
arm_X 19643421..19643662 413..654 100 -> Plus
arm_X 19643722..19643881 655..816 98   Plus

BO27182.pep Sequence

Translation from 16 to 832

> BO27182.pep
MRMLFMIFTIAERSFKILELPTTPTLLLRRQSHNYGYDYISPTHIELSRE
ATRLVIRRLQRTVLRLIRDPDFIMSAEANPEMDKEHHESPFAANRKAGAS
GAGKQDSNCRTCNDFKSWSKQQRLISNVQSAKVKHMAAAEKLTVNAAEDP
LPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRL
YPCEFCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCT
KVNERWRDGWLDGSCDASFLDH

BO27182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PB 266 CG12534-PB 1..266 1..266 1421 100 Plus
Alr-PA 261 CG12534-PA 1..261 6..266 1396 100 Plus