BO27188.complete Sequence
685 bp assembled on 2011-06-29
GenBank Submission: KX797701
> BO27188.complete
GAAGTTATCAGTCGACATGGCGATTGTGTCGTCGGCCCGTGAGTCGCTCT
CCCATGCGATGAACAACCGCTTCTTGCCCAACCTGGAGTACTTGCTGCAG
GGATCTATCCTGGATTCCGCCGTGGAACACTTGATGCACAGACTAAAGGG
ACTCTGCGACAATGTGGACACCTCGCCGGAGCCGTTTCACGATCTGGAAG
TGTGTATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGCTGCTTCTTCGC
GTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATGCGCTACCTAGG
AAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACGCAGCTGCATGG
ACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGGAAATGGGCTTC
CGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTCCGCAAGGGGCG
CATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCCCGGCAAGCAGC
AGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAGTGGAACTCTCT
GTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAAATGCGCGTGTT
TGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGATCGACTACAAGC
GACTGGGCGGCATGCCGGCAAGCTTTCTAGACCAT
BO27188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RA | 654 | CG14802-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
MED18-RC | 153 | CG14802-PC | 1..130 | 17..146 | 635 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RA | 842 | CG14802-RA | 106..756 | 17..667 | 3255 | 100 | Plus |
MED18-RC | 865 | CG14802-RC | 251..779 | 139..667 | 2645 | 100 | Plus |
MED18-RC | 865 | CG14802-RC | 106..235 | 17..146 | 635 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1866206..1866496 | 139..429 | 1455 | 100 | Plus |
X | 23542271 | X | 1866562..1866801 | 428..667 | 1200 | 100 | Plus |
X | 23542271 | X | 1866014..1866138 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 2351..2412 | 248..187 | 112 | 64.5 | Minus |
BO27188.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:54 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 106..762 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:25 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 106..756 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:46 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 106..756 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:39 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 106..756 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:39 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1866014..1866138 | 17..141 | 100 | -> | Plus |
X | 1866209..1866495 | 142..428 | 100 | -> | Plus |
X | 1866563..1866801 | 429..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:46 Download gff for
BO27188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1760047..1760171 | 17..141 | 100 | -> | Plus |
arm_X | 1760242..1760528 | 142..428 | 100 | -> | Plus |
arm_X | 1760596..1760834 | 429..669 | 99 | | Plus |
BO27188.pep Sequence
Translation from 16 to 685
> BO27188.pep
MAIVSSARESLSHAMNNRFLPNLEYLLQGSILDSAVEHLMHRLKGLCDNV
DTSPEPFHDLEVCMSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVD
LRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITV
SKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLK
PLVQLEKIDYKRLGGMPASFLDH
BO27188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-PA | 217 | CG14802-PA | 1..217 | 1..217 | 1118 | 100 | Plus |
MED18-PC | 50 | CG14802-PC | 1..43 | 1..43 | 206 | 97.7 | Plus |