Clone BO27188 Report

Search the DGRC for BO27188

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMED18-RA
Protein status:BO27188.pep: Imported from assembly
Sequenced Size:685

Clone Sequence Records

BO27188.complete Sequence

685 bp assembled on 2011-06-29

GenBank Submission: KX797701

> BO27188.complete
GAAGTTATCAGTCGACATGGCGATTGTGTCGTCGGCCCGTGAGTCGCTCT
CCCATGCGATGAACAACCGCTTCTTGCCCAACCTGGAGTACTTGCTGCAG
GGATCTATCCTGGATTCCGCCGTGGAACACTTGATGCACAGACTAAAGGG
ACTCTGCGACAATGTGGACACCTCGCCGGAGCCGTTTCACGATCTGGAAG
TGTGTATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGCTGCTTCTTCGC
GTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATGCGCTACCTAGG
AAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACGCAGCTGCATGG
ACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGGAAATGGGCTTC
CGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTCCGCAAGGGGCG
CATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCCCGGCAAGCAGC
AGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAGTGGAACTCTCT
GTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAAATGCGCGTGTT
TGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGATCGACTACAAGC
GACTGGGCGGCATGCCGGCAAGCTTTCTAGACCAT

BO27188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 654 CG14802-PA 1..651 17..667 3255 100 Plus
MED18-RC 153 CG14802-PC 1..130 17..146 635 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 842 CG14802-RA 106..756 17..667 3255 100 Plus
MED18-RC 865 CG14802-RC 251..779 139..667 2645 100 Plus
MED18-RC 865 CG14802-RC 106..235 17..146 635 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866206..1866496 139..429 1455 100 Plus
X 23542271 X 1866562..1866801 428..667 1200 100 Plus
X 23542271 X 1866014..1866138 17..141 625 100 Plus
Blast to na_te.dros performed 2014-11-26 16:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 2351..2412 248..187 112 64.5 Minus

BO27188.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:54 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..762 17..676 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:25 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..756 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:46 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..756 17..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:39 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..756 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:39 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866014..1866138 17..141 100 -> Plus
X 1866209..1866495 142..428 100 -> Plus
X 1866563..1866801 429..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:46 Download gff for BO27188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760047..1760171 17..141 100 -> Plus
arm_X 1760242..1760528 142..428 100 -> Plus
arm_X 1760596..1760834 429..669 99   Plus

BO27188.pep Sequence

Translation from 16 to 685

> BO27188.pep
MAIVSSARESLSHAMNNRFLPNLEYLLQGSILDSAVEHLMHRLKGLCDNV
DTSPEPFHDLEVCMSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVD
LRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITV
SKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLK
PLVQLEKIDYKRLGGMPASFLDH

BO27188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-PA 217 CG14802-PA 1..217 1..217 1118 100 Plus
MED18-PC 50 CG14802-PC 1..43 1..43 206 97.7 Plus