BO27189.complete Sequence
421 bp assembled on 2010-08-18
GenBank Submission: KX794453
> BO27189.complete
GAAGTTATCAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGG
GGCCGGGATTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTG
TACCCCAAGGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAA
TTGCGATTACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGA
TTATGCACGAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCC
GATCCCACGCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCA
TCGGGAGGCGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGA
TGCGACTGTACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACG
GAGGCAAGCTTTCTAGACCAT
BO27189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-RC | 390 | CG3284-PC | 1..387 | 17..403 | 1935 | 100 | Plus |
RpII15-RB | 390 | CG3284-PB | 1..387 | 17..403 | 1935 | 100 | Plus |
RpII15-RA | 390 | CG3284-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-RC | 1035 | CG3284-RC | 43..430 | 16..403 | 1940 | 100 | Plus |
RpII15-RB | 694 | CG3284-RB | 36..423 | 16..403 | 1940 | 100 | Plus |
RpII15-RA | 701 | CG3284-RA | 43..430 | 16..403 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14309186..14309573 | 16..403 | 1940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:41:29 has no hits.
BO27189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:53 Download gff for
BO27189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 39..425 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:48 Download gff for
BO27189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 58..444 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:29 Download gff for
BO27189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 44..430 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:29 Download gff for
BO27189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14309187..14309573 | 17..405 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:48 Download gff for
BO27189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10134909..10135295 | 17..405 | 99 | | Plus |
BO27189.pep Sequence
Translation from 16 to 421
> BO27189.pep
MTTAFDAAHTEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQ
EADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVF
FQAQTRRAEEEMRLYYVCTNQNCTHRWTEASFLDH
BO27189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-PC | 129 | CG3284-PC | 1..129 | 1..129 | 722 | 100 | Plus |
RpII15-PB | 129 | CG3284-PB | 1..129 | 1..129 | 722 | 100 | Plus |
RpII15-PA | 129 | CG3284-PA | 1..129 | 1..129 | 722 | 100 | Plus |
CG33785-PA | 108 | CG33785-PA | 4..108 | 20..129 | 157 | 30.9 | Plus |