Clone BO27189 Report

Search the DGRC for BO27189

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:271
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRpII15-RA
Protein status:BO27189.pep: Imported from assembly
Sequenced Size:421

Clone Sequence Records

BO27189.complete Sequence

421 bp assembled on 2010-08-18

GenBank Submission: KX794453

> BO27189.complete
GAAGTTATCAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGG
GGCCGGGATTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTG
TACCCCAAGGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAA
TTGCGATTACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGA
TTATGCACGAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCC
GATCCCACGCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCA
TCGGGAGGCGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGA
TGCGACTGTACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACG
GAGGCAAGCTTTCTAGACCAT

BO27189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-RC 390 CG3284-PC 1..387 17..403 1935 100 Plus
RpII15-RB 390 CG3284-PB 1..387 17..403 1935 100 Plus
RpII15-RA 390 CG3284-PA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-RC 1035 CG3284-RC 43..430 16..403 1940 100 Plus
RpII15-RB 694 CG3284-RB 36..423 16..403 1940 100 Plus
RpII15-RA 701 CG3284-RA 43..430 16..403 1940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14309186..14309573 16..403 1940 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:41:29 has no hits.

BO27189.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:53 Download gff for BO27189.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 39..425 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:48 Download gff for BO27189.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 58..444 17..405 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:29 Download gff for BO27189.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 44..430 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:29 Download gff for BO27189.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14309187..14309573 17..405 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:48 Download gff for BO27189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10134909..10135295 17..405 99   Plus

BO27189.pep Sequence

Translation from 16 to 421

> BO27189.pep
MTTAFDAAHTEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQ
EADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVF
FQAQTRRAEEEMRLYYVCTNQNCTHRWTEASFLDH

BO27189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-PC 129 CG3284-PC 1..129 1..129 722 100 Plus
RpII15-PB 129 CG3284-PB 1..129 1..129 722 100 Plus
RpII15-PA 129 CG3284-PA 1..129 1..129 722 100 Plus
CG33785-PA 108 CG33785-PA 4..108 20..129 157 30.9 Plus