BO27190.complete Sequence
775 bp assembled on 2010-09-22
> BO27190.complete
GAAGTTATCAGTCGACATGACGGAGCTAAGACGAACTAATGGCCTGCACA
AGCAGCACTCCCTGAGAGATCGACAGGTGCATCCGATGCTGCACGCCCTG
GCGGATCACGGCTGCAACCTCAGCAGCGGTGGCAACAGTGCGGCCAGCAC
CACCAGCAGTAGTACGGCCACGGCCACCACAGCACTTGGTGGTGCCGGCG
GTTTGGGCGGTCTGGGTGGCCTGAACGGTGGTGTCGGCATAACAAGTCAG
CGGAGCGTTGAGTTCGATGAGCACGACATCTTCTACGTCTCACCATCCAA
GCGAAAAGGAGCCACTTCAGTAGGTTCCTCTGGCAATGTGGTAACCTTCT
CGAATTTTGTAAGTGAACAACGCCTGACGCCCTCGTCGTCGAACCGCGGA
TCCCTGAAGCGGAGCAAGGGCCGCTCCAATCAGTCCCTGTGCAGCTGCGA
TGCCGGCGACGAGGCCCAACTGGATTTGCAACCGAATGCGGCAAGGCCGC
TGTACGAGTACAGTCTGGAACGAAAGCGTAAGACACACACCTACTCCTGC
GAGCAGAATGCGCAGATACTTATGAGACTGGAGCGCGAGCGTAATCGTAA
ATTATCGCTGACTGGGATGGAAACGGGATTGGGAATCGGACTGGGAGTGG
GATTGGGAATGGGATCTGGAGGAGGAACAGGAGGAGCCGGAGACCCTCAG
AAATACAGACAGAGTTTTGCAACAGGCAAATGCGCTAACCAAACAGAGCG
TGGCACGGCAAGCTTTCTAGACCAT
BO27190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42750-RB | 3207 | CG42750-PB | 1..685 | 17..701 | 3410 | 99.9 | Plus |
| CG42750-RC | 3204 | CG42750-PC | 1..682 | 17..701 | 3330 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42750-RB | 6066 | CG42750-RB | 1852..2536 | 17..701 | 3410 | 99.9 | Plus |
| CG42750-RC | 6913 | CG42750-RC | 2092..2773 | 17..701 | 3330 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18209769..18210151 | 700..318 | 1900 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18210557..18210860 | 320..17 | 1520 | 100 | Minus |
| 2L | 23513712 | 2L | 18209637..18209696 | 757..698 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:49:19 has no hits.
BO27190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 09:24:29 Download gff for
BO27190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31786-RB | 768..1508 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:30 Download gff for
BO27190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42750-RB | 1852..2542 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:37 Download gff for
BO27190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42750-RB | 1852..2542 | 17..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:37 Download gff for
BO27190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18209635..18209693 | 701..759 | 96 | <- | Minus |
| 2L | 18209769..18210148 | 321..700 | 99 | <- | Minus |
| 2L | 18210557..18210860 | 17..320 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:30 Download gff for
BO27190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18209635..18209693 | 701..759 | 96 | <- | Minus |
| arm_2L | 18209769..18210148 | 321..700 | 99 | <- | Minus |
| arm_2L | 18210557..18210860 | 17..320 | 100 | | Minus |
BO27190.pep Sequence
Translation from 16 to 775
> BO27190.pep
MTELRRTNGLHKQHSLRDRQVHPMLHALADHGCNLSSGGNSAASTTSSST
ATATTALGGAGGLGGLGGLNGGVGITSQRSVEFDEHDIFYVSPSKRKGAT
SVGSSGNVVTFSNFVSEQRLTPSSSNRGSLKRSKGRSNQSLCSCDAGDEA
QLDLQPNAARPLYEYSLERKRKTHTYSCEQNAQILMRLERERNRKLSLTG
METGLGIGLGVGLGMGSGGGTGGAGDPQKYRQSFATGKCANQTERGTASF
LDH
BO27190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42750-PB | 1068 | CG42750-PB | 1..228 | 1..228 | 1174 | 100 | Plus |
| CG42750-PC | 1067 | CG42750-PC | 1..227 | 1..228 | 1158 | 99.6 | Plus |
