BO27195.complete Sequence
1246 bp assembled on 2010-09-22
GenBank Submission: KX797830
> BO27195.complete
GAAGTTATCAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTT
TGTGGCAGGTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAG
CAGACGGTGCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCT
GCTTCAATCCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGA
GCAACTATAACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGT
CCAATGGGTGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTC
TATCAACACCTACAATGCTGGCTTATATCAAACCAATGAACCACCGCTAT
TGGGACCCGGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACC
ACCACACCGGAGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCCTGAT
GAAGGAGCCCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCA
CACCGCAAGGACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGGAC
CACGACACTTCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGG
CAACGTGGCACGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCATGG
TGCAAATGGGAGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGAAC
AACATTCCCGTGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAACA
GAACTTCCTATCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTCGC
CCAGCTTCAAGGAGTACACCGGCTCCAAGAACAATCGTTTCCTATCGCCG
GCCCAGGCGAGCAAGAATCGCATTCAACCACCGAGCAAGATTTTGCACTT
TTTCAACACACCGCCCGGCTTGACCGAGGACCAACTGATTGGAATCTTTA
ACATCAAGGATGTGCCCGCCACATCGGTGCGCCTGTTCCCCTTGAAGACC
GAGCGCTCGTCGTCGGGACTGATCGAATTTTCCAATATCTCGCAGGCAGT
GCTGGCTATCATGAAGTGCAACCATCTGCCTATTGAGGGTAAAGGCACCA
AGTTCCCATTCATCATGAAGCTGTGCTTTTCCTCATCCAAGAGCATGAAC
GGCGCCTGGAACAATGCGGCCAGCGAGGGCATGATCGAGAAGGAGAACGA
GGTGGATACCAAGGTGGACATCTACAATGCAAGCTTTCTAGACCAT
BO27195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RB | 1215 | CG9218-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| sm-RV | 1623 | CG9218-PV | 730..1620 | 338..1228 | 4455 | 100 | Plus |
| sm-RT | 1659 | CG9218-PT | 766..1656 | 338..1228 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RB | 1783 | CG9218-RB | 301..1513 | 16..1228 | 6065 | 100 | Plus |
| sm-RW | 1179 | CG9218-RW | 19..909 | 338..1228 | 4455 | 100 | Plus |
| sm-RV | 3190 | CG9218-RV | 1642..2532 | 338..1228 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546449..19546771 | 338..16 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 889..613 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 19532169..19532376 | 1095..888 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 19538029..19538212 | 521..338 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 19530567..19530702 | 1228..1093 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 613..517 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:52:30 has no hits.
BO27195.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 14:38:23 Download gff for
BO27195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 264..1475 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:39 Download gff for
BO27195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 302..1513 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:44 Download gff for
BO27195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 302..1513 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:44 Download gff for
BO27195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19530564..19530700 | 1095..1230 | 98 | <- | Minus |
| 2R | 19532170..19532374 | 890..1094 | 100 | <- | Minus |
| 2R | 19532436..19532711 | 614..889 | 100 | <- | Minus |
| 2R | 19537776..19537868 | 521..613 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 339..520 | 100 | <- | Minus |
| 2R | 19546449..19546770 | 17..338 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:39 Download gff for
BO27195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15425281..15425373 | 521..613 | 100 | <- | Minus |
| arm_2R | 15425535..15425716 | 339..520 | 100 | <- | Minus |
| arm_2R | 15418069..15418205 | 1095..1230 | 98 | <- | Minus |
| arm_2R | 15419675..15419879 | 890..1094 | 100 | <- | Minus |
| arm_2R | 15419941..15420216 | 614..889 | 100 | <- | Minus |
| arm_2R | 15433954..15434275 | 17..338 | 100 | | Minus |
BO27195.pep Sequence
Translation from 16 to 1246
> BO27195.pep
MNNLNANASAFLWQVPPPQQLTPQSVQQQTVQSVQSMQSVQHSQLLQSAV
VSQPRKFGGNKSNYNYMQNHAIMGPGGGPMGGIGGNPNIYRKRHSINTYN
AGLYQTNEPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAG
VVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARI
KFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSE
VINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPP
GLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMK
CNHLPIEGKGTKFPFIMKLCFSSSKSMNGAWNNAASEGMIEKENEVDTKV
DIYNASFLDH
BO27195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-PB | 404 | CG9218-PB | 1..404 | 1..404 | 2134 | 100 | Plus |
| sm-PI | 420 | CG9218-PI | 1..420 | 1..404 | 2104 | 96 | Plus |
| sm-PJ | 464 | CG9218-PJ | 1..464 | 1..404 | 1691 | 75.4 | Plus |
| sm-PK | 535 | CG9218-PK | 234..535 | 103..404 | 1579 | 99.3 | Plus |
| sm-PAC | 301 | CG9218-PAC | 4..301 | 107..404 | 1563 | 99.3 | Plus |
