BO27201.complete Sequence
1246 bp assembled on 2010-09-17
GenBank Submission: KX798652
> BO27201.complete
GAAGTTATCAGTCGACATGGCGGATTGGAAGAGACCTTTGGAGACCTGCA
TCGCACTCTGTGTGCTCCTGTGCGTATTTCACGTGAACGGACAGTGGGAG
TTTCCCGCCCAGTATCCGGAACCGTATCGAAATCCGAATCCGAATCCAGT
GCCGGATCCAACCAGACCGCCGCCGCCACCACCTTCTCCGCCATGTGGAA
GACCACCGCCTGGATCTCCGCCACCGGGCCCGCCTCCACCTGGTCCTCCA
CCTGGTTGCCCCGGAGGTCCAGGAGGTCCGCTGCAGCATCGGCAATGGGA
CAATGGCCCCAGGCAGTGGCAACCACGTCGTCCGCCACCAAATCACCATC
GCAACTTCCACAACATCTTCCTGAACACCGAAAGCAAAGTGGACGGGGAG
AACTACAACAAGACCGCGGAGACGGAGGACTTGCACGACGACTTCAATGG
CCGATCCATTGTGGCACCTGGACAGTACCCGCACATGGCCGCTCTGGGAT
TCCGGAACGAGAACCACGAGATCGACTACAAATGTGGTGGAAGCCTCATC
AGCGAAGAGTTCGTGCTCACAGCTGCTCATTGCCTGACTACTCATGGCAC
CTCGCCCGACATCGTAAAAATCGGAGACATTAAGCTCAAGGAATGGGAGC
TCAACGTGGCGCCCCAAAGACGACGTGTTGCCCAGATCTATCTGCATCCA
CTGTACAATGCGAGTCTTAACTACCATGACATCGGGCTCATCCAGCTGAA
TCGACCGGTGGAATACACCTGGTTCGTGAGGCCAGTTCGCCTGTGGCCCA
TGAACGACATACCATACGGCAAGCTGCACACCATGGGCTATGGCTCGACG
GGATTCGCCCAGCCGCAGACGAACATACTCACGGAACTGGATCTCTCGGT
GGTGCCCATTGAGCAGTGTAACTCCAGTCTGCCAGCCGACGAAGGTTCTC
CCCACGGATTACTCACAAGTCAGATATGCGCCCATGACTATGAGAAAAAT
CGCGATACTTGCCAGGGCGATTCTGGAGGACCGCTTCAACTGAACTTGGA
ACGTCGGCGTCGAAGGCACACAAGTCGTAAACACTATCGCTACTACCTGG
TGGGCATCACATCGTATGGAGCATATTGTCGCAGTGAACTTCCAGGTGTT
TATACGCGTGTTTCATCCTATATCGATTGGATAGCATCCATAGTGTGGCC
TAATTATTATAGCGAATTTACTAATCAAGCAAGCTTTCTAGACCAT
BO27201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11670-RD | 1215 | CG11670-PD | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11670-RD | 1337 | CG11670-RD | 43..1254 | 17..1228 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13043250..13043669 | 597..1016 | 2100 | 100 | Plus |
| 3R | 32079331 | 3R | 13042320..13042644 | 164..488 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 13042092..13042240 | 17..165 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 13043720..13043853 | 1014..1147 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 13042884..13042994 | 487..597 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 13043918..13044003 | 1143..1228 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:41:51 has no hits.
BO27201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:26:31 Download gff for
BO27201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 25..1236 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:25 Download gff for
BO27201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 43..1254 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:27 Download gff for
BO27201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 43..1254 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:27 Download gff for
BO27201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13042885..13042994 | 488..597 | 100 | -> | Plus |
| 3R | 13043921..13044003 | 1146..1230 | 97 | | Plus |
| 3R | 13043251..13043668 | 598..1015 | 100 | -> | Plus |
| 3R | 13043722..13043851 | 1016..1145 | 100 | -> | Plus |
| 3R | 13042092..13042240 | 17..165 | 100 | -> | Plus |
| 3R | 13042322..13042643 | 166..487 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:25 Download gff for
BO27201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8869444..8869573 | 1016..1145 | 100 | -> | Plus |
| arm_3R | 8869643..8869725 | 1146..1230 | 97 | | Plus |
| arm_3R | 8868607..8868716 | 488..597 | 100 | -> | Plus |
| arm_3R | 8867814..8867962 | 17..165 | 100 | -> | Plus |
| arm_3R | 8868044..8868365 | 166..487 | 100 | -> | Plus |
| arm_3R | 8868973..8869390 | 598..1015 | 100 | -> | Plus |
BO27201.pep Sequence
Translation from 16 to 1246
> BO27201.pep
MADWKRPLETCIALCVLLCVFHVNGQWEFPAQYPEPYRNPNPNPVPDPTR
PPPPPPSPPCGRPPPGSPPPGPPPPGPPPGCPGGPGGPLQHRQWDNGPRQ
WQPRRPPPNHHRNFHNIFLNTESKVDGENYNKTAETEDLHDDFNGRSIVA
PGQYPHMAALGFRNENHEIDYKCGGSLISEEFVLTAAHCLTTHGTSPDIV
KIGDIKLKEWELNVAPQRRRVAQIYLHPLYNASLNYHDIGLIQLNRPVEY
TWFVRPVRLWPMNDIPYGKLHTMGYGSTGFAQPQTNILTELDLSVVPIEQ
CNSSLPADEGSPHGLLTSQICAHDYEKNRDTCQGDSGGPLQLNLERRRRR
HTSRKHYRYYLVGITSYGAYCRSELPGVYTRVSSYIDWIASIVWPNYYSE
FTNQASFLDH
BO27201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11670-PD | 404 | CG11670-PD | 1..404 | 1..404 | 2296 | 100 | Plus |
| CG14642-PC | 392 | CG14642-PC | 76..391 | 45..394 | 777 | 47 | Plus |
| CG14642-PB | 392 | CG14642-PB | 76..391 | 45..394 | 777 | 47 | Plus |
| snk-PB | 435 | CG7996-PB | 195..435 | 152..397 | 452 | 38.7 | Plus |
| snk-PA | 435 | CG7996-PA | 195..435 | 152..397 | 452 | 38.7 | Plus |
