BO27205.complete Sequence
1072 bp assembled on 2010-09-22
GenBank Submission: KX799838
> BO27205.complete
GAAGTTATCAGTCGACATGAAACAAATCGTCGTGCTTTGCATATTCTCAC
TCTTTGCCAAAGATGCACAAACATTGCTCCTAAGCCAAATGGATTGGAAG
AATCTGCGCAACAGTGGAGCCTTGGACCTAAATGTCTTGCGCTGCTTTTT
GCGCGACAAAAACTATTGTCCCAGTCCACATATCGATCACCGTCTGTATG
CACCCAATGGACCGCGTCGTGGAACTCCTTTAAATGTTAAGAACCCAATA
ACGCTTTATAAAGGTGGATTTAGCAAGCACCGCGAGACTGTCTTCATAAT
ACACGGATTCAATGGAACTGCCATAGATATTCACCTGCAATTCCTTCGAG
ATGCTTACCTATCCCGCGATTTCAATGTCATTACAGTGGACTGGCGACCT
TTGACCCGCTATCCATGCTACCTCCACTCGCTTATAAACACCAGGTTAAC
TGCGCAATGCACCGCCCAGATCTACGCCTTCCTCACCCACTACGGAGCTG
TCCGGGAACGGATCACTTGCGTGGGTCACTCCCTGGGCGCCCACATCTGC
GGCATGATCAGCAACCACCTGACGCGGAAACAGTATCGCATCATTGGATT
GGATCCCGCCCGGCCTTTAATTGAGCGCATGAAGAGCAACAAGTTTCGGT
TGTCGATCGATGATGCCAACGTCATTCAGGTGCTCCACACCAATGCCGGT
TTCCTGGGCCAGGAGGATAACTCCGGGCATCTAAACTACTGTGTCAACGG
TGGACGCATCCAGCCGTTCTGCAAAGGAAATCCAATCAGAAAATCGCGAT
GTTCGCACTTCTTGAGCATCTGCTACTTGGCCACTGCCACATTTAAACAC
AATAAGTTCATGGGAGTACCGTGTCCCAATGGCTGCCTGAATCTTAGTGG
ATCCAAGAGGCTGCCAGTGAGCGGCAAAGTGAATCCCTTCGAGTTCGCCT
CGCTGATAAGGGAGTACCACATAGGCAACGATGCCCCCGATGACGCCCGA
GGCTGCATTTGCATTGATGTGCCGTATGCCAAGCACTGCCCCTTTACGGA
TGCGGCAAGCTTTCTAGACCAT
BO27205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6431-RB | 1041 | CG6431-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| CG6431-RC | 1056 | CG6431-PC | 204..1053 | 205..1054 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6431-RB | 1689 | CG6431-RB | 585..1622 | 17..1054 | 5190 | 100 | Plus |
| CG6431-RC | 1191 | CG6431-RC | 275..1124 | 205..1054 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10727833..10728269 | 353..789 | 2185 | 100 | Plus |
| 2L | 23513712 | 2L | 10728352..10728556 | 789..993 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 10727605..10727753 | 205..353 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 10726300..10726443 | 61..204 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 10728613..10728673 | 994..1054 | 305 | 100 | Plus |
| 2L | 23513712 | 2L | 10726099..10726144 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:53:41 has no hits.
BO27205.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 14:38:25 Download gff for
BO27205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 560..1597 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:45 Download gff for
BO27205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 585..1622 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:17 Download gff for
BO27205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 585..1622 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:17 Download gff for
BO27205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10726302..10726443 | 63..204 | 100 | -> | Plus |
| 2L | 10728352..10728556 | 789..993 | 100 | -> | Plus |
| 2L | 10727605..10727753 | 205..353 | 100 | -> | Plus |
| 2L | 10728613..10728673 | 994..1056 | 96 | | Plus |
| 2L | 10726099..10726144 | 17..62 | 100 | -> | Plus |
| 2L | 10727834..10728268 | 354..788 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:45 Download gff for
BO27205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10726099..10726144 | 17..62 | 100 | -> | Plus |
| arm_2L | 10726302..10726443 | 63..204 | 100 | -> | Plus |
| arm_2L | 10727605..10727753 | 205..353 | 100 | -> | Plus |
| arm_2L | 10727834..10728268 | 354..788 | 100 | -> | Plus |
| arm_2L | 10728352..10728556 | 789..993 | 100 | -> | Plus |
| arm_2L | 10728613..10728673 | 994..1056 | 96 | | Plus |
BO27205.pep Sequence
Translation from 16 to 1072
> BO27205.pep
MKQIVVLCIFSLFAKDAQTLLLSQMDWKNLRNSGALDLNVLRCFLRDKNY
CPSPHIDHRLYAPNGPRRGTPLNVKNPITLYKGGFSKHRETVFIIHGFNG
TAIDIHLQFLRDAYLSRDFNVITVDWRPLTRYPCYLHSLINTRLTAQCTA
QIYAFLTHYGAVRERITCVGHSLGAHICGMISNHLTRKQYRIIGLDPARP
LIERMKSNKFRLSIDDANVIQVLHTNAGFLGQEDNSGHLNYCVNGGRIQP
FCKGNPIRKSRCSHFLSICYLATATFKHNKFMGVPCPNGCLNLSGSKRLP
VSGKVNPFEFASLIREYHIGNDAPDDARGCICIDVPYAKHCPFTDAASFL
DH
BO27205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6431-PB | 346 | CG6431-PB | 1..346 | 1..346 | 1884 | 100 | Plus |
| CG6431-PC | 351 | CG6431-PC | 36..351 | 30..346 | 1603 | 93.7 | Plus |
| CG13282-PB | 484 | CG13282-PB | 58..309 | 37..286 | 323 | 33.2 | Plus |
| CG14034-PC | 338 | CG14034-PC | 20..268 | 38..288 | 319 | 33.6 | Plus |
| CG14034-PB | 338 | CG14034-PB | 20..268 | 38..288 | 319 | 33.6 | Plus |
