BO27212.complete Sequence
3121 bp assembled on 2010-10-15
GenBank Submission: KX798267
> BO27212.complete
GAAGTTATCAGTCGACATGAACAGAATCATGCTGTTGGTGGCCTTTGCGG
CCGGCGTTGTGGCTGCTGGAAGGATAACTACGAATCAGGACAGGGTCCAG
GGTATTGACCGCATGTCCTTGGAGGATCTGCAGCTCCAAAAGTTTATCCT
GGATATCGTCCAGAATATTCGTCAGCCTCTACAGCAGAGTGAGCTCATCA
ATCTAGATGTGGGTCTGATTGCAGACAGTCAGCGTTATCGTGGCGGCATT
GATAAGGTGATGCATAACGTCATCGATCTGGATCGCCAGCGTCGCCTCCT
CGACGAGCACCAGGTGTACTCCGTGGGTCGTTTGGAGCATGTGCAGCAGC
TGCGTGGCATATACCGCCTGCTGGCTCGCGCCCAGGACTTTGACACCCTT
CGCCGTAATGTGGTCTACCTGCGCCGTAACATTAACCCTGTCCTGCTGGT
TAATGCCTTGGCTCTGGCCATTCGCGATCGTGAGGACACTCAAGCTCTGA
TCGTGCCCGCTGTCCAGGAGCTGCTCCCCGAACTGTATCTGGATGAGGAA
GTGATTCAGCAGGTGCGCAGCGTCCTAAGGGAACAAACCCAGCGCCCATC
GCTCATGGACATCGTGGGTATGCGCCAGCGGGCTATGAACCCAGTGATGA
GCATCCTGATGCCCTGGAGGGAGATCCACATGCAGATGGCTCTAAGGAAA
CAGCAGAACATCCAGAACGTTTTGGGCCAGAAACGCGTCGTTGTCCGTGC
CGAGAACCAGGGACAGGTTGAGGGCACCTCTCTGCTGACGGACGATATTG
AGTTGCAGAACTTTGTTCAAAATCTCATACAGGAACTTGCCCTTCTGGAG
GATGTTACTCAGTTGGAGCAGAGCCAATTGATCAACAATGATCAACGTGA
AGAGCAATGGGTCGGTCGTCAGCGCGTGCAGTACCAAGATAACAACCAGG
AAAGAGATCTGGGTCAGGATGTAGACACTGGACGCCTACTCCGTGTGAGT
CGCCGCCGCCTTCTGGAGCAACAGGATGAATATCAGGGTCAGAACATCTA
TGGAAACCAAAAGGATCGTTTCCAGCGTCTCCTCCGCCGGGATGACGACA
ACGACGACAATGATGACGATGATGATCAGGATATTCGCATGGGTCGTGTC
CAGCTGCAGCGTGGTATCAGCCAGGGAGGTCTCCGCATTGGAGGAGCTCA
TAACCTGCCCACCGTTAGCGTGAACAGTGACCGTCTGCTTCACGTGAGCC
GTCGCCGTTTGAACGCCATCCAACAAGATCAGCAGCAGGATCAGCTGAAC
GGTCGCCAGCGTTTCATGGGTTTGGTGAGAGGAGACCGCCTCAGTGAGGG
TCGTCGTGTTGGTCAGCTGGATGATGTGCGTCAGGAGCGTCAGAACAACT
GGCAGAAGCAGGACTACATCTTGACACAAGGTCGCACTTTCGGAGTCCAG
CAGGAGCGTCAAAACTATGCCGATCAGTTGGAGAGCGTGAGCCGCGACGA
CGAGCGATTGGTGCATATTAACCGACGCCGCCTCAACCAGGACAACCAGG
ACATCCAGCAACAACAGATGCATTTTCCCCGCAGGATTAACTCCATTGGC
GAGGGTCGCCGCGTCATGGGTGAGCGCCCCATCCAAGATGAGGACATTCT
GAAGCTAATCCGCGGCGAAAACCGTCTGAAGCTGATGACCGATGATGAGA
TCCTTGAGATGCTGCAAAGGAACCGCCAGCAGCGTCTGCAAAAGCACCAG
AACGATGATGATGACGATGTCAACGATGACGATGTGAATGTGGTGCACCG
ACAGGGACTACGAAGCCGCCGCAGCCTTCCCAATCTCCGTCAGCAAAACA
ACCGCCTCAGCGAAATTGTCCTGCACAATCTTCGCCAGCTGGTCGCACGT
CTTAACCAGGAAAGCATCGCCCAGGGACAGCTGATCGAAGAGCAGCAGCA
GTTGATCAACAATCCCCGCCTGACGCAATCCGAGCGATATGCCCTCCGCT
TGAACCAAATCCGAATCAATTCCCAGCGCAGCCGTCAAGTCCTCGCCCAG
ATCGGCCAGATTGAGCAGCGTATCCAGGAGGTTATTGGTCAGGTGCTGAA
CCAGGTGAATGTCAACTCGCTGCGTGGCCAGGTAATCGATCAACGCCAAG
TGGAATCCCTGATCGCCGATGTACTGCTGGGTCGCCTTGGTCAGGTTGGC
ATCATGACCATTATCCGCCAGGTGGTCCAGGACAACAACATTGAGCAAAT
CGATCGTACTGGCTTGGGCATCCGCCTCAGCGATCCCGTCGTGCAGTACA
CCCTGCGCCGGATTGTGAGGATCGTGGACGAACAGCGTGAACAAATCCTT
GGAGGCTACCGCCAGGAGCAACTGCAGATGCGCGGTGTTTCGATCAACGA
TGTTCGTGTGGATAAACTGCGCACTCGCATCGAGGAGCACGAATTGGACC
TGAGCAACTTGGTCGAGCAGCAGGTTCAGGGCATCCAGCAGGAGATTGTG
GGACGCCAGCGTCGCCTCAACAACAAGGCCTTCACCATTGACATGGACAT
CACTTCGGATCAGGATCAGGATGCTATTATTCGCATCTTCCTGGGACCCG
CAGAGGATCAACAGGGAAGGCAAGGAGCTTCCCTGGATGAGCGCCGACGT
GACTTCGTTCTTCTCGATGCCATCCAAGTGCAGCTGGAGAATGGACGCAA
CCGCATTCATCGCAGGTCCATCGATATCCCCTGGACAACTAGCGATGTGA
CGCCCCTGGTGGAGATCTACCGCCAAGTGATGCTGCAATTGAAGGGTCAG
CAGGCGCAACAGGTCGTGGGTATCCAACAGCTGGTCGGCGAGAACGGACG
CTTCCCCCAGCACTTGCTGCTACCCCGTGGAAGGCCCGAGGGTCTCCCCA
TGCAACTCCTGGTCGTGGTTTCTCCTCTGGTTGAGCTGCAGGTTCAGGAC
GTCGTTCCCGCTATCACCATTGGCATTGGCTCCGCCTCTCTTCGTGATGC
CCGCCCATTGGGTTATCCTCTGGACCGGCCCATCCATAACGAGCAGGAGC
TCCTGCAGTTGACCAATGTCCTGCTTCAGGATGTGGTCATCATTCAGGAG
AACGCAAGCTTTCTAGACCAT
BO27212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbp1-RA | 3090 | CG17285-PA | 1..3087 | 17..3103 | 15435 | 100 | Plus |
| Fbp1-RD | 3084 | CG17285-PD | 1..3081 | 17..3103 | 15310 | 99.8 | Plus |
| Fbp1-RB | 2994 | CG17285-PB | 1..2991 | 113..3103 | 14955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbp1-RA | 3405 | CG17285-RA | 95..3181 | 17..3103 | 15435 | 100 | Plus |
| Fbp1-RD | 3399 | CG17285-RD | 95..3175 | 17..3103 | 15310 | 99.8 | Plus |
| Fbp1-RB | 3465 | CG17285-RB | 245..3241 | 107..3103 | 14985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14094813..14097809 | 3103..107 | 14985 | 100 | Minus |
| 3L | 28110227 | 3L | 14097869..14097959 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:45 has no hits.
BO27212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:14 Download gff for
BO27212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 98..3184 | 17..3105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:05 Download gff for
BO27212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 95..3181 | 17..3105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:43 Download gff for
BO27212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 95..3181 | 17..3105 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:43 Download gff for
BO27212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14094811..14097808 | 108..3105 | 99 | <- | Minus |
| 3L | 14097869..14097959 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:05 Download gff for
BO27212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14087911..14090908 | 108..3105 | 99 | <- | Minus |
| arm_3L | 14090969..14091059 | 17..107 | 100 | | Minus |
BO27212.pep Sequence
Translation from 16 to 3121
> BO27212.pep
MNRIMLLVAFAAGVVAAGRITTNQDRVQGIDRMSLEDLQLQKFILDIVQN
IRQPLQQSELINLDVGLIADSQRYRGGIDKVMHNVIDLDRQRRLLDEHQV
YSVGRLEHVQQLRGIYRLLARAQDFDTLRRNVVYLRRNINPVLLVNALAL
AIRDREDTQALIVPAVQELLPELYLDEEVIQQVRSVLREQTQRPSLMDIV
GMRQRAMNPVMSILMPWREIHMQMALRKQQNIQNVLGQKRVVVRAENQGQ
VEGTSLLTDDIELQNFVQNLIQELALLEDVTQLEQSQLINNDQREEQWVG
RQRVQYQDNNQERDLGQDVDTGRLLRVSRRRLLEQQDEYQGQNIYGNQKD
RFQRLLRRDDDNDDNDDDDDQDIRMGRVQLQRGISQGGLRIGGAHNLPTV
SVNSDRLLHVSRRRLNAIQQDQQQDQLNGRQRFMGLVRGDRLSEGRRVGQ
LDDVRQERQNNWQKQDYILTQGRTFGVQQERQNYADQLESVSRDDERLVH
INRRRLNQDNQDIQQQQMHFPRRINSIGEGRRVMGERPIQDEDILKLIRG
ENRLKLMTDDEILEMLQRNRQQRLQKHQNDDDDDVNDDDVNVVHRQGLRS
RRSLPNLRQQNNRLSEIVLHNLRQLVARLNQESIAQGQLIEEQQQLINNP
RLTQSERYALRLNQIRINSQRSRQVLAQIGQIEQRIQEVIGQVLNQVNVN
SLRGQVIDQRQVESLIADVLLGRLGQVGIMTIIRQVVQDNNIEQIDRTGL
GIRLSDPVVQYTLRRIVRIVDEQREQILGGYRQEQLQMRGVSINDVRVDK
LRTRIEEHELDLSNLVEQQVQGIQQEIVGRQRRLNNKAFTIDMDITSDQD
QDAIIRIFLGPAEDQQGRQGASLDERRRDFVLLDAIQVQLENGRNRIHRR
SIDIPWTTSDVTPLVEIYRQVMLQLKGQQAQQVVGIQQLVGENGRFPQHL
LLPRGRPEGLPMQLLVVVSPLVELQVQDVVPAITIGIGSASLRDARPLGY
PLDRPIHNEQELLQLTNVLLQDVVIIQENASFLDH
BO27212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbp1-PA | 1029 | CG17285-PA | 1..1029 | 1..1029 | 5153 | 100 | Plus |
| Fbp1-PD | 1027 | CG17285-PD | 1..1027 | 1..1029 | 5130 | 99.8 | Plus |
| Fbp1-PB | 997 | CG17285-PB | 1..997 | 33..1029 | 4999 | 100 | Plus |
| Lsp1alpha-PA | 816 | CG2559-PA | 346..780 | 610..1025 | 358 | 28.1 | Plus |
| Lsp1gamma-PA | 772 | CG6821-PA | 315..729 | 612..1006 | 333 | 28 | Plus |
| Lsp1alpha-PA | 816 | CG2559-PA | 33..192 | 38..198 | 192 | 26.1 | Plus |
