BO27223.complete Sequence
982 bp assembled on 2010-09-22
GenBank Submission: KX799911
> BO27223.complete
GAAGTTATCAGTCGACATGTCGTTCCTGGGCAACACATCCGATCTGGAGT
GCGAAAAGAACGAGTTCCCGAGGCAGCGACCCTCGGGCATCATCACCAAG
GTGGCCGCCCACAAGCTCTCCGCGGAGCCCAAGTGGACGGACAAGCGGGA
GGATGACTCCGATTCGGAGGTCTCGTCGCCGGATAATTTCCTGACCAAAG
GCGCCTTCCTATTGACCCCATCCTACGAGTTGTCCATGGAACGGGCGGCC
CTCATCTGCGAGAAGATGGCATTCAAGGGATGCTTCAGCTTGACCAAAAC
CGCTACAGGCATTCTGTTTAAATTCTCACATCCAGATGACTATCAGGCGG
TGTTCAAGAAGGGCTTCCACAAGGTTACCGGGGCGCGATTCTACCGCAAG
ATTGCCATACCGTGTCGGCCGAGGAAGACCTTCACCCTGTACGTGCTGGA
TGTGCCCGAGGATCTGCCCGTGGAGGATATCCGGCATGCCATGTACAAGT
TCGATTCGGTGGTGGAGGTGGTGCGCCTGCACATCTACTCGAGCCTCGCC
AGCAATGCCGCCAATGCCACCTCCTCCTCCGCCGTTGCCGCCAGCAGCTC
CTCCGGCGGCGGTGATAAGGGCGTCGAAGGCGTCTCCAAGAGCGTGGGTT
CTGTGGTGGGCGATGCCATCGAGAAGGCCGAGCGTCCTGAGCGCAGAGAA
CTGCCTCCAGCCGTTATCCGGGTCACCCTGGCCTCCATGGATGAGTACAA
CATTCTGTTGCAGAACGGACTCAACTTCTACGATGCCACGTTCTTTCCCA
CTGAGGCCAACATCTCGCTGAAGGGCGCCAAGATCGATTATAAGCGCAGA
ATGCTCGATGGCTCGATTCCCGGACGGGTGAGGGAACTGCTGCCCGTTTT
CGATGCGGCTGGCTTCTGCAAGCTGCCACCGCCCACCAGCAAGCTAATTA
AGCCGCCGAGGTCGGCAAGCTTTCTAGACCAT
BO27223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14445-RB | 951 | CG14445-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG14445-RA | 1011 | CG14445-PA | 1..614 | 17..630 | 3070 | 100 | Plus |
| CG14445-RD | 1071 | CG14445-PD | 1..384 | 17..400 | 1920 | 100 | Plus |
| CG14445-RA | 1011 | CG14445-PA | 674..1008 | 630..964 | 1675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14445-RB | 1548 | CG14445-RB | 164..1113 | 15..964 | 4750 | 100 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 164..779 | 15..630 | 3080 | 100 | Plus |
| CG14445-RD | 1668 | CG14445-RD | 164..549 | 15..400 | 1930 | 100 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 839..1173 | 630..964 | 1675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6238944..6239175 | 399..630 | 1160 | 100 | Plus |
| X | 23542271 | X | 6239386..6239607 | 628..849 | 1110 | 100 | Plus |
| X | 23542271 | X | 6237999..6238200 | 199..400 | 1010 | 100 | Plus |
| X | 23542271 | X | 6237478..6237664 | 15..201 | 935 | 100 | Plus |
| X | 23542271 | X | 6240006..6240123 | 847..964 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:54:03 has no hits.
BO27223.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 14:38:26 Download gff for
BO27223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 164..1111 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:50 Download gff for
BO27223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 166..1113 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:24 Download gff for
BO27223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 166..1113 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:24 Download gff for
BO27223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6238001..6238200 | 201..400 | 100 | -> | Plus |
| X | 6238946..6239174 | 401..629 | 100 | -> | Plus |
| X | 6239388..6239607 | 630..849 | 100 | -> | Plus |
| X | 6240009..6240123 | 850..966 | 98 | | Plus |
| X | 6237480..6237663 | 17..200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:50 Download gff for
BO27223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6132034..6132233 | 201..400 | 100 | -> | Plus |
| arm_X | 6131513..6131696 | 17..200 | 100 | -> | Plus |
| arm_X | 6132979..6133207 | 401..629 | 100 | -> | Plus |
| arm_X | 6133421..6133640 | 630..849 | 100 | -> | Plus |
| arm_X | 6134042..6134156 | 850..966 | 98 | | Plus |
BO27223.pep Sequence
Translation from 16 to 982
> BO27223.pep
MSFLGNTSDLECEKNEFPRQRPSGIITKVAAHKLSAEPKWTDKREDDSDS
EVSSPDNFLTKGAFLLTPSYELSMERAALICEKMAFKGCFSLTKTATGIL
FKFSHPDDYQAVFKKGFHKVTGARFYRKIAIPCRPRKTFTLYVLDVPEDL
PVEDIRHAMYKFDSVVEVVRLHIYSSLASNAANATSSSAVAASSSSGGGD
KGVEGVSKSVGSVVGDAIEKAERPERRELPPAVIRVTLASMDEYNILLQN
GLNFYDATFFPTEANISLKGAKIDYKRRMLDGSIPGRVRELLPVFDAAGF
CKLPPPTSKLIKPPRSASFLDH
BO27223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14445-PB | 316 | CG14445-PB | 1..316 | 1..316 | 1625 | 100 | Plus |
| CG14445-PA | 336 | CG14445-PA | 1..336 | 1..316 | 1594 | 94 | Plus |
| CG14445-PD | 356 | CG14445-PD | 1..356 | 1..316 | 1563 | 88.8 | Plus |
| CG14445-PC | 362 | CG14445-PC | 1..362 | 1..316 | 1557 | 87.3 | Plus |
