BO27234.complete Sequence
1210 bp assembled on 2010-09-17
GenBank Submission: KX794001
> BO27234.complete
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCACAACAACATGATTATCGACAACACCTGCATGC
AGTCCGTGTCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTG
TACGGCACCATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGG
CCTCATATCCGGCAGGAACTACGGTGACCATTACGCCATCTTTGAGCCTG
GCACCCGTAACACCGGAACCGCCATTGCCGGCAAGAATATCGCCAACCCT
GTGGCCATGATCAGTGCCAGTATCGATATGTTGAACCATCTGGGCCACAA
GGAGCACGCCAATGTCATTCAGGAGGCCGTCTACCAGACCATTGTCAACG
ATGCCATTCGCACGCCAGATATTGGCGGCACCAACTCCAGTACCGATGTG
GTTGAGAATATACTCAAGATCTTGAGTGCCAAGCGCGTGAATGCAAGCTT
TCTAGACCAT
BO27234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RD | 1182 | CG5028-PD | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG5028-RC | 1179 | CG5028-PC | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG5028-RB | 1209 | CG5028-PB | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RD | 1742 | CG5028-RD | 122..1298 | 16..1192 | 5885 | 100 | Plus |
| CG5028-RC | 1608 | CG5028-RC | 122..1298 | 16..1192 | 5885 | 100 | Plus |
| CG5028-RB | 1934 | CG5028-RB | 122..1298 | 16..1192 | 5885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25681265..25682045 | 151..931 | 3905 | 100 | Plus |
| 3R | 32079331 | 3R | 25682105..25682291 | 932..1118 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 25681121..25681199 | 74..152 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 25682353..25682429 | 1116..1192 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 25680966..25681024 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:37:13 has no hits.
BO27234.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-20 11:04:58 Download gff for
BO27234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RC | 150..1325 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:31 Download gff for
BO27234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 123..1298 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:21 Download gff for
BO27234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 123..1298 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:21 Download gff for
BO27234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680967..25681023 | 17..73 | 100 | -> | Plus |
| 3R | 25681121..25681198 | 74..151 | 100 | -> | Plus |
| 3R | 25682105..25682291 | 932..1118 | 100 | -> | Plus |
| 3R | 25682356..25682429 | 1119..1194 | 97 | | Plus |
| 3R | 25681266..25682045 | 152..931 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:31 Download gff for
BO27234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21506689..21506745 | 17..73 | 100 | -> | Plus |
| arm_3R | 21506843..21506920 | 74..151 | 100 | -> | Plus |
| arm_3R | 21506988..21507767 | 152..931 | 100 | -> | Plus |
| arm_3R | 21507827..21508013 | 932..1118 | 100 | -> | Plus |
| arm_3R | 21508078..21508151 | 1119..1194 | 97 | | Plus |
BO27234.pep Sequence
Translation from 16 to 1210
> BO27234.pep
MALRLTQRLLQTQTPFLTRGYPLLVTKEKTEDVAHTKSALQKKVTGTDIP
SAQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEG
NDDLDYAITSIKRNGVALKGNIETKSQSLTEVSRNVAIRNELDLYVNVVH
CKSYPGIPARHHDIDVVLIRQNTDGEYAMLEHESVPGIVESMKVVTVENA
ERVARYAFEFARQNNRKKVTTIHKANIMKLSDGLFLEVANRVHKDYPELE
HNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGLMGGAGLISGR
NYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV
IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKILSAKRVNASFLDH
BO27234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-PC | 392 | CG5028-PC | 1..392 | 1..392 | 2022 | 100 | Plus |
| CG5028-PD | 393 | CG5028-PD | 1..392 | 1..392 | 2022 | 100 | Plus |
| CG5028-PB | 402 | CG5028-PB | 1..392 | 1..392 | 2022 | 100 | Plus |
| CG5028-PA | 402 | CG5028-PA | 1..392 | 1..392 | 2022 | 100 | Plus |
| CG6439-PB | 370 | CG6439-PB | 22..370 | 35..387 | 791 | 43.7 | Plus |
